View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2624-Insertion-2 (Length: 807)

Name: NF2624-Insertion-2
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2624-Insertion-2
NF2624-Insertion-2
[»] chr1 (16 HSPs)
chr1 (438-807)||(3370393-3370770)
chr1 (646-805)||(42559165-42559324)
chr1 (309-396)||(3370780-3370867)
chr1 (410-546)||(42559378-42559512)
chr1 (105-223)||(3370958-3371088)
chr1 (443-551)||(43869719-43869826)
chr1 (554-638)||(42559226-42559311)
chr1 (447-551)||(23172583-23172686)
chr1 (61-101)||(9121712-9121752)
chr1 (171-210)||(35009010-35009049)
chr1 (169-212)||(42559819-42559862)
chr1 (67-101)||(9120085-9120119)
chr1 (441-487)||(35009447-35009493)
chr1 (67-101)||(47013126-47013160)
chr1 (421-478)||(50555634-50555691)
chr1 (421-490)||(52643164-52643233)
[»] chr2 (15 HSPs)
chr2 (427-787)||(4046813-4047174)
chr2 (598-801)||(26581860-26582063)
chr2 (698-807)||(161140-161245)
chr2 (421-551)||(26584282-26584412)
chr2 (444-551)||(40098687-40098793)
chr2 (576-638)||(26581918-26581980)
chr2 (427-490)||(40151283-40151346)
chr2 (171-212)||(4046447-4046488)
chr2 (61-101)||(24205638-24205678)
chr2 (377-412)||(26584486-26584521)
chr2 (169-212)||(26584724-26584767)
chr2 (62-101)||(37022194-37022233)
chr2 (175-212)||(361625-361662)
chr2 (377-410)||(4046703-4046736)
chr2 (171-212)||(20940901-20940942)
[»] chr7 (21 HSPs)
chr7 (410-804)||(367210-367595)
chr7 (557-807)||(13035399-13035650)
chr7 (427-552)||(7402400-7402525)
chr7 (410-551)||(13035192-13035333)
chr7 (639-744)||(13035376-13035481)
chr7 (685-805)||(7402605-7402725)
chr7 (446-551)||(6057885-6057989)
chr7 (441-546)||(48456952-48457060)
chr7 (366-412)||(367106-367152)
chr7 (443-551)||(25972255-25972362)
chr7 (579-638)||(7402605-7402664)
chr7 (171-210)||(13034849-13034888)
chr7 (171-213)||(7402069-7402111)
chr7 (421-490)||(48851864-48851933)
chr7 (61-101)||(20479728-20479768)
chr7 (169-212)||(366872-366915)
chr7 (421-487)||(35402853-35402919)
chr7 (421-487)||(35692891-35692957)
chr7 (171-212)||(6602511-6602552)
chr7 (412-457)||(32839962-32840007)
chr7 (445-490)||(37792571-37792616)
[»] chr8 (17 HSPs)
chr8 (475-807)||(24285276-24285610)
chr8 (410-551)||(17807970-17808111)
chr8 (640-803)||(17807762-17807926)
chr8 (647-764)||(10771281-10771398)
chr8 (567-634)||(17807826-17807893)
chr8 (441-551)||(10268912-10269025)
chr8 (576-639)||(10771300-10771363)
chr8 (416-487)||(29237777-29237848)
chr8 (441-551)||(11032009-11032122)
chr8 (648-749)||(11789701-11789802)
chr8 (61-101)||(601713-601753)
chr8 (757-805)||(11789965-11790013)
chr8 (61-101)||(29239196-29239236)
chr8 (499-546)||(38884383-38884429)
chr8 (365-407)||(17808175-17808217)
chr8 (67-101)||(29237197-29237231)
chr8 (171-212)||(11788497-11788538)
[»] chr5 (19 HSPs)
chr5 (598-806)||(19997912-19998120)
chr5 (567-807)||(27076522-27076762)
chr5 (427-551)||(27076320-27076444)
chr5 (554-675)||(9220989-9221111)
chr5 (410-545)||(9221156-9221290)
chr5 (554-638)||(19997973-19998058)
chr5 (644-744)||(9221026-9221126)
chr5 (567-638)||(19997842-19997913)
chr5 (640-744)||(27076489-27076593)
chr5 (362-408)||(27076194-27076240)
chr5 (410-551)||(19997629-19997765)
chr5 (648-744)||(19997817-19997913)
chr5 (61-101)||(29620178-29620218)
chr5 (61-101)||(29621825-29621865)
chr5 (61-101)||(40782220-40782260)
chr5 (169-212)||(27075994-27076037)
chr5 (421-475)||(2853862-2853916)
chr5 (67-101)||(40780596-40780630)
chr5 (421-478)||(2180315-2180372)
[»] chr3 (15 HSPs)
chr3 (567-807)||(22219273-22219513)
chr3 (640-805)||(35862748-35862913)
chr3 (475-638)||(23876595-23876760)
chr3 (682-807)||(23876529-23876657)
chr3 (410-551)||(22219588-22219729)
chr3 (421-551)||(35862957-35863086)
chr3 (567-638)||(35862809-35862880)
chr3 (443-551)||(5126852-5126959)
chr3 (443-551)||(5134107-5134214)
chr3 (643-744)||(22219442-22219542)
chr3 (169-212)||(25535156-25535199)
chr3 (443-551)||(41624767-41624874)
chr3 (421-517)||(54093582-54093678)
chr3 (377-412)||(22219788-22219823)
chr3 (421-487)||(2660750-2660816)
[»] chr4 (10 HSPs)
chr4 (695-804)||(7150138-7150247)
chr4 (410-545)||(9590807-9590945)
chr4 (578-634)||(7150127-7150183)
chr4 (443-551)||(44973512-44973619)
chr4 (411-551)||(4614012-4614151)
chr4 (362-405)||(7149955-7149998)
chr4 (427-460)||(7150081-7150114)
chr4 (421-490)||(49523651-49523720)
chr4 (443-516)||(50132514-50132587)
chr4 (421-490)||(54386666-54386735)
[»] chr6 (8 HSPs)
chr6 (693-807)||(24431642-24431755)
chr6 (516-592)||(24548670-24548747)
chr6 (61-101)||(3456788-3456828)
chr6 (67-103)||(32455933-32455969)
chr6 (63-101)||(13613626-13613664)
chr6 (443-517)||(25170841-25170915)
chr6 (174-212)||(31209040-31209078)
chr6 (421-478)||(11355749-11355806)
[»] scaffold0081 (1 HSPs)
scaffold0081 (67-101)||(54267-54301)
[»] scaffold0345 (1 HSPs)
scaffold0345 (421-478)||(102-159)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 438 - 807
Target Start/End: Complemental strand, 3370770 - 3370393
Alignment:
Q  438 cctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgc-------ctgattaaaatatgtttttggaaaatgtaatattta 530  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||       ||||||||  ||||||||||||||||||||||||||    
T  3370770 cctaattcatgaagtttatctcaaccctaggatttccaaagaagtgatgcttgatgcttgatgcctgattaagttatgtttttggaaaatgtaatattta 3370671  T
Q  531 aacttgtttaaattatcccccgagttaatgcctcatg-ttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgact 629  Q
    ||||||||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  3370670 aacttgtttaaattatcccccgagttaataccacatggttgggtttctttttgcctatgtaatattcctgcacttgtagtgtaatgactgaattacgact 3370571  T
Q  630 tatttgatgaaatgtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaatt 729  Q
    ||||| ||| |||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3370570 tatttaatggaatgtatgacttatgacttgtcaatgcctcatagttgagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaatt 3370471  T
Q  730 acgacttatttgatgatataatcaaggatcaaattgtgtctctatacttttttactttattatgcacatatatgcacc 807  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3370470 acgacttatttgatggtataatcaaggatcaaattgtgtctctttacttttttactttattatgcacatatatgcacc 3370393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 646 - 805
Target Start/End: Complemental strand, 42559324 - 42559165
Alignment:
Q  646 tgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatga 745  Q
    |||||||||||| ||||||||| |||||||  ||| |||||||||||| |||| ||| ||||||||||||||||||||| ||| | |||||||||||||     
T  42559324 tgacttatgacttgttaatgccccatagttgggttgctttttgcctatgtaatattcatgcacttgtagtgcaatgacttaatgatgacttatttgatgg 42559225  T
Q  746 tataatcaaggatcaaattgtgtctctatacttttttactttattatgcacatatatgca 805  Q
    |||  |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  42559224 tattttcaaggatcaaattgtgtctctttacttttttacttttttatgaacatatatgca 42559165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 396
Target Start/End: Complemental strand, 3370867 - 3370780
Alignment:
Q  309 gtaataatttagggatttgctcaaaggtctaaaagcaaagcattttatagaagtggcatgagaggactagttatttcaactgagaagt 396  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||    
T  3370867 gtaataatttaggaatttgctcaaaggtctaaatgcaaagcattttaaagaaatggtatgagaggactagttatgtcaactgagaagt 3370780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 410 - 546
Target Start/End: Complemental strand, 42559512 - 42559378
Alignment:
Q  410 agttatgggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgt 509  Q
    |||||||||  |||||||||||||||| || |||||||| |||||||| |||||| | |||||  |||||||| ||| ||||||  || ||||| ||||     
T  42559512 agttatgggtcatccgattctactcaaccccaattcatgtagtttatcccaaccccatgattttcaaagaagtaatgtttgatgtttgtttaaattatgc 42559413  T
Q  510 ttttggaaaatgtaatatttaaacttgtttaaattat 546  Q
    |||||  |||||||||||||| |||||||||||||||    
T  42559412 ttttg--aaatgtaatatttagacttgtttaaattat 42559378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 3371088 - 3370958
Alignment:
Q  105 tccatcaaactcatccctctatccaatccctccattaatgtggctgatgtgtcgtcatgcatgtt------------ccacgtgtcatccagtcagccac 192  Q
    |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||| | ||||||            ||||||| |||||||||||||||    
T  3371088 tccatcaacctcatccctctgtccaatccctccattagtgaggttgatatgtcgtcctacatgttgtattgtgatgtccacgtgccatccagtcagccac 3370989  T
Q  193 gtgtacaaggaccaatttgacaaaaatgtta 223  Q
    ||||||||||| |||||||||| ||||||||    
T  3370988 gtgtacaaggatcaatttgacagaaatgtta 3370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 443 - 551
Target Start/End: Original strand, 43869719 - 43869826
Alignment:
Q  443 ttcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaa 542  Q
    ||||||||||||||| |||| || || |||| ||||||||||| |||||||| || ||||| |||| |||||| || ||||||||||  |||||||||||    
T  43869719 ttcatggagtttatcccaactctcggctttccaaagaagtgatacttgatgcatgtttaaattatgcttttgg-aactgtaatatttcgacttgtttaaa 43869817  T
Q  543 ttatccccc 551  Q
    |||| ||||    
T  43869818 ttatgcccc 43869826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 638
Target Start/End: Complemental strand, 42559311 - 42559226
Alignment:
Q  554 gttaatgcctcat-gttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatg 638  Q
    ||||||||| ||| |||| ||| ||||||||||||||||||||| |||| |||||||| ||||||| ||| | |||||||||||||    
T  42559311 gttaatgccccatagttgggttgctttttgcctatgtaatattcatgcacttgtagtgcaatgacttaatgatgacttatttgatg 42559226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 23172583 - 23172686
Alignment:
Q  447 tggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaattat 546  Q
    ||||||||||| ||||||  | ||||  ||||||||||| |||||||| || ||||| |||| |||||| |||||||||||||  |||||||||||||||    
T  23172583 tggagtttatcccaacccccgaattttcaaagaagtgatacttgatgcatgtttaaattatgattttgg-aaatgtaatatttcgacttgtttaaattat 23172681  T
Q  547 ccccc 551  Q
     ||||    
T  23172682 gcccc 23172686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 9121752 - 9121712
Alignment:
Q  61 gccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  9121752 gccaatttcgtccctaaatttttcgaaatatcaaattagtc 9121712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 35009010 - 35009049
Alignment:
Q  171 cacgtgtcatccagtcagccacgtgtacaaggaccaattt 210  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  35009010 cacgtgtcatccagtcaaccacgtgtacagggaccaattt 35009049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 42559862 - 42559819
Alignment:
Q  169 tccacgtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||    
T  42559862 tccacgtgttatccagtcagccatgtgtacaaggaccattttga 42559819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 9120085 - 9120119
Alignment:
Q  67 ttcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||||||| |||||||||||||||||||||||||    
T  9120085 ttcgtccctgaatttttcgaaatatcaaattagtc 9120119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 35009447 - 35009493
Alignment:
Q  441 aattcatggagtttatctcaaccctaggatttctaaagaagtgatgc 487  Q
    |||| |||||||||||| |||||| |||||||| |||||||||||||    
T  35009447 aattaatggagtttatcccaaccccaggatttccaaagaagtgatgc 35009493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 47013160 - 47013126
Alignment:
Q  67 ttcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||||||| |||||||||||||||||||||||||    
T  47013160 ttcgtccctgaatttttcgaaatatcaaattagtc 47013126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 50555691 - 50555634
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaag 478  Q
    ||||| |||||||||| |||||| ||||||||||||| |||| | |||||||| ||||    
T  50555691 atccgtttctactcaaccctaatgcatggagtttatcccaactccaggatttccaaag 50555634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 490
Target Start/End: Complemental strand, 52643233 - 52643164
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttg 490  Q
    ||||| |||||||||| || ||| |||||||||||||||||  | | |||||| |||| |||||||||||    
T  52643233 atccgcttctactcaaccccaatacatggagtttatctcaattccaagatttccaaagtagtgatgcttg 52643164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 427 - 787
Target Start/End: Original strand, 4046813 - 4047174
Alignment:
Q  427 ttctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaata 526  Q
    |||||||||| | |||||||||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  4046813 ttctactcaaccataattcatggagtttatcccaaccccaggatttccaaagaagtgatgtttgatgcctgattaaattatgcttttggaaaatgtaata 4046912  T
Q  527 tttaaacttgtttaaattat-cccccgagttaatgcctcat-gttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaatta 624  Q
    |||| ||||||||||||||| ||||| |||||||||||||| ||||  |||||||||||||||||||||||| |||  |||||||||||||||||||||     
T  4046913 tttatacttgtttaaattatgccccctagttaatgcctcattgttggatttctttttgcctatgtaatattcatgcgcttgtagtgtaatgactgaattg 4047012  T
Q  625 cgacttatttgatgaaatgtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgact 724  Q
    |||||||||| ||| |||||||||||||||||| ||||| ||||||||||| |||| |||||||||||| ||||| |||||||  |||||||||||||||    
T  4047013 cgacttattttatggaatgtatgacttatgacttgttaaagcctcatagttgagtttctttttgcctatgtaatgctcttgcatgtgtagtgcaatgact 4047112  T
Q  725 gaattacgacttatttgatgatataatcaaggatcaaattgtgtctctatacttttttacttt 787  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  4047113 gaattacgacttatttgatggtataatcaa-gatcaaattgtgtctctttacttttttacttt 4047174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 598 - 801
Target Start/End: Complemental strand, 26582063 - 26581860
Alignment:
Q  598 tgcatttgtagtgtaatgactgaattacgacttatttgatgaaatgtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataa 697  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||  ||| |||||||| ||| |||    
T  26582063 tgcacttgtagtgtaatgactgaattacgacttatttgatggaatgtatgacttatgacttgttaatgcctcgtagttg-gttgctttttgcttatgtaa 26581965  T
Q  698 tgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgtgtctctatac-ttttttactttattatgcac 796  Q
    | ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  26581964 tattcttgcacttgtagtgcaatgactgagttatgacttatttgatggtataatcaaggatcaaattgtgtctctttactttttttactttattctgcac 26581865  T
Q  797 atata 801  Q
    |||||    
T  26581864 atata 26581860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 698 - 807
Target Start/End: Original strand, 161140 - 161245
Alignment:
Q  698 tgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgtgtctctatacttttttactttattatgcaca 797  Q
    |||||||| ||||||||||||||||||||||||||||||| | |    ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  161140 tgttcttgtacttgtagtgcaatgactgaattacgacttactgg----tataatcaaggatcaaattgtgtctctttacttttttactttgttatgcaca 161235  T
Q  798 tatatgcacc 807  Q
    ||||||||||    
T  161236 tatatgcacc 161245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 421 - 551
Target Start/End: Complemental strand, 26584412 - 26584282
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaat 520  Q
    |||||||||||||||| |||||||||| |||| |||| |||||| |||||||  ||| ||||||||||||||||||||||||| |||| |||||||||||    
T  26584412 atccgattctactcaaccctaattcatcgagtatatcccaaccccaggattttcaaataagtgatgcttgatgcctgattaaattatgcttttggaaaat 26584313  T
Q  521 gtaatatttaaacttgtttaaattatccccc 551  Q
     | || |||| ||||||||||||||| ||||    
T  26584312 atgatgtttagacttgtttaaattatgcccc 26584282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 444 - 551
Target Start/End: Original strand, 40098687 - 40098793
Alignment:
Q  444 tcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaat 543  Q
    |||||||||||||| | |||||  |||||| |||||||||||| ||||||  || ||||| | || |||||| |||||||||||||| ||||||||||||    
T  40098687 tcatggagtttatcccgaccctcagatttccaaagaagtgatgtttgatgtatgtttaaattgtgcttttgg-aaatgtaatatttagacttgtttaaat 40098785  T
Q  544 tatccccc 551  Q
    ||| ||||    
T  40098786 tatgcccc 40098793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 576 - 638
Target Start/End: Complemental strand, 26581980 - 26581918
Alignment:
Q  576 ctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatg 638  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||| ||| |||||||||||||    
T  26581980 ctttttgcttatgtaatattcttgcacttgtagtgcaatgactgagttatgacttatttgatg 26581918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 40151346 - 40151283
Alignment:
Q  427 ttctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttg 490  Q
    |||||||||| |  ||||||||||||||||| |||| | |||||||| ||||||||||||||||    
T  40151346 ttctactcaacctcaattcatggagtttatcccaacaccaggatttccaaagaagtgatgcttg 40151283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 4046447 - 4046488
Alignment:
Q  171 cacgtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  4046447 cacgtgtcatctagtcagccacgtatacaaggaccaatttga 4046488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 24205638 - 24205678
Alignment:
Q  61 gccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  24205638 gccaatttcgtccctgaatttttcgaaatatcaaattagtc 24205678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 412
Target Start/End: Complemental strand, 26584521 - 26584486
Alignment:
Q  377 agttatttcaactgagaagtctacgcaaacaccagt 412  Q
    |||||||| |||||||||||||||||||||||||||    
T  26584521 agttattttaactgagaagtctacgcaaacaccagt 26584486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 26584767 - 26584724
Alignment:
Q  169 tccacgtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||    
T  26584767 tccacgtatcatccagtcagccacgtgtacaatgacgaatttga 26584724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 37022233 - 37022194
Alignment:
Q  62 ccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  37022233 ccaatttcgtccctgaatttttcgaaatatcaaattagtc 37022194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 361625 - 361662
Alignment:
Q  175 tgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  361625 tgtcatcaagtcagccacgtgtacaaggaccattttga 361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 4046703 - 4046736
Alignment:
Q  377 agttatttcaactgagaagtctacgcaaacacca 410  Q
    |||||||||||| |||||||||||||||||||||    
T  4046703 agttatttcaacggagaagtctacgcaaacacca 4046736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 20940901 - 20940942
Alignment:
Q  171 cacgtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    ||||||||||||||| || ||||||||||| |||||||||||    
T  20940901 cacgtgtcatccagttagacacgtgtacaatgaccaatttga 20940942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 210; Significance: 1e-114; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 410 - 804
Target Start/End: Original strand, 367210 - 367595
Alignment:
Q  410 agttatgggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgt 509  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||| |||||||||| |||      
T  367210 agttatggtctatccggttctactcaatcctaattcatggagtttatctcaaccccaagatttccaaagaagtgatgtttgatacctgattaaattatac 367309  T
Q  510 ttttggaaaatgtaatatttaaacttgtttaaattatcccccgagttaatgcctcatgttgagtttctttttgcctatgtaatattcttgcatttgtagt 609  Q
    ||||||||||||||||||||| |||||||||||||||  |||      |||      |||| ||||||||||||||||||||||||| | ||| ||||||    
T  367310 ttttggaaaatgtaatatttagacttgtttaaattatgtccc------atg------gttgggtttctttttgcctatgtaatattcctacatctgtagt 367397  T
Q  610 gtaatgactgaattacgacttatttgatgaaatgtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcact 709  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  ||| |||||| ||||| |||||||||||||||    
T  367398 gtagtgactgaattacgacttatttgatggaatgtatgacttatgacttgttaatgcctcatagttaggttgctttttacctatgtaatgttcttgcact 367497  T
Q  710 tgtagtgcaatgactgaattacgac---ttatttgatgatataatcaaggatcaaattgtgtctctatacttttttactttattatgcacatatatgc 804  Q
    | ||||||||||||||||||| |||   |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  367498 tatagtgcaatgactgaattatgacttattatttgatggtataatcaatgatcaaattgtgtctctttacttttttactttattctgtacatatatgc 367595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 557 - 807
Target Start/End: Original strand, 13035399 - 13035650
Alignment:
Q  557 aatgcctcatg-ttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatgaaatgtatgacttatga 655  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||| ||||||||||| |||     
T  13035399 aatgcctcatggttgagtttctttttgcctatgtaatattcctgcacttgtagtgcaatgactgaatgacgacttatttgatggaatgtatgactcatgg 13035498  T
Q  656 ctcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaag 755  Q
    || ||||||| |||||||||  ||| |||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||  |  |  ||||||||||    
T  13035499 cttgttaatgtctcatagttgggttgctttttgcctgtgtaatgttcttgaacttgtagtgcaatggctgaattacgacttaacttcttgtataatcaag 13035598  T
Q  756 gatcaaattgtgtctctatacttttttactttattatgcacatatatgcacc 807  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  13035599 gatcaaattgtgtctctttacttttttactttgttttgcacatatatgcacc 13035650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 427 - 552
Target Start/End: Original strand, 7402400 - 7402525
Alignment:
Q  427 ttctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaata 526  Q
    |||||||||| ||||||||||||| |||||| |||||| || ||||  ||||||||||||||| || |||||||||| |||| |||||||||||||||||    
T  7402400 ttctactcaaccctaattcatggaatttatcccaaccccagaattttcaaagaagtgatgcttcatacctgattaaattatgcttttggaaaatgtaata 7402499  T
Q  527 tttaaacttgtttaaattatcccccg 552  Q
    |||| |||||| |||||||| |||||    
T  7402500 tttagacttgtataaattatgccccg 7402525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 13035192 - 13035333
Alignment:
Q  410 agttatgggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgt 509  Q
    |||||||||  ||||| ||||| |||| | |||||||||||||||||| |||||| |||||||| |||||||||  |||||||| ||| ||||| ||||     
T  13035192 agttatgggtcatccggttctaatcaaccataattcatggagtttatcccaaccccaggatttccaaagaagtggcgcttgatgtctgcttaaattatgc 13035291  T
Q  510 ttttggaaaatgtaatatttaaacttgtttaaattatccccc 551  Q
    |||| |||||| ||||||||| ||||||||||||||| ||||    
T  13035292 tttttgaaaatataatatttagacttgtttaaattatgcccc 13035333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 639 - 744
Target Start/End: Original strand, 13035376 - 13035481
Alignment:
Q  639 aaatgtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttat 738  Q
    ||||||||||||||||||| |  |||||||||| ||| |||| |||||||||||| |||| ||| ||||||||||||||||||||||||| |||||||||    
T  13035376 aaatgtatgacttatgacttgaaaatgcctcatggttgagtttctttttgcctatgtaatattcctgcacttgtagtgcaatgactgaatgacgacttat 13035475  T
Q  739 ttgatg 744  Q
    ||||||    
T  13035476 ttgatg 13035481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 685 - 805
Target Start/End: Original strand, 7402605 - 7402725
Alignment:
Q  685 tttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgtgtctctatacttttttac 784  Q
    ||||||||| |||| ||| |||| ||||| |  ||||| ||||||  ||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||    
T  7402605 tttgcctatgtaatattcctgcatttgtaatataatgaatgaattgtgacttatttgatggtataaccaaggatcaaattgtttctctttacttttttac 7402704  T
Q  785 tttattatgcacatatatgca 805  Q
    ||| || ||||||||||||||    
T  7402705 tttgttttgcacatatatgca 7402725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 446 - 551
Target Start/End: Original strand, 6057885 - 6057989
Alignment:
Q  446 atggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaatta 545  Q
    |||||||||||| ||||||| || |||| ||||||||||| |||||| | || ||||| |||| |||||| || ||||||||||  ||||||||||||||    
T  6057885 atggagtttatcccaaccctcggctttccaaagaagtgatacttgatacatgtttaaattatgcttttgg-aactgtaatatttcgacttgtttaaatta 6057983  T
Q  546 tccccc 551  Q
    | ||||    
T  6057984 tgcccc 6057989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 441 - 546
Target Start/End: Original strand, 48456952 - 48457060
Alignment:
Q  441 aattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatg----cctgattaaaatatgtttttggaaaatgtaatatttaaacttg 536  Q
    |||||| |||||||||| ||||||   |||||| |||||||||||||||||||    | |  |||||||||||||||||||| ||||||||||| |||||    
T  48456952 aattcacggagtttatcccaacccccagatttccaaagaagtgatgcttgatggaaacgtatttaaaatatgtttttggaaa-tgtaatatttagacttg 48457050  T
Q  537 tttaaattat 546  Q
    ||| ||||||    
T  48457051 tttgaattat 48457060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 367106 - 367152
Alignment:
Q  366 atgagaggactagttatttcaactgagaagtctacgcaaacaccagt 412  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||    
T  367106 atgagatgaccagttatttcaactgagaagtctacgcaaacaccagt 367152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 443 - 551
Target Start/End: Complemental strand, 25972362 - 25972255
Alignment:
Q  443 ttcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaa 542  Q
    ||||||||||||||| ||||||  |  |||| ||||||||||| |||||||| || ||||| |||| |||||| || |||||||| |  |||||||||||    
T  25972362 ttcatggagtttatcccaacccccgactttccaaagaagtgatacttgatgcatgtttaaattatgcttttgg-aactgtaatatctcgacttgtttaaa 25972264  T
Q  543 ttatccccc 551  Q
    |||| ||||    
T  25972263 ttatgcccc 25972255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 579 - 638
Target Start/End: Original strand, 7402605 - 7402664
Alignment:
Q  579 tttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatg 638  Q
    |||||||||||||||||| |||||||||| | |||||| ||||||  |||||||||||||    
T  7402605 tttgcctatgtaatattcctgcatttgtaatataatgaatgaattgtgacttatttgatg 7402664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 13034849 - 13034888
Alignment:
Q  171 cacgtgtcatccagtcagccacgtgtacaaggaccaattt 210  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  13034849 cacgtgtcatctagtcagccacgtgtacaaggaccaattt 13034888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 7402069 - 7402111
Alignment:
Q  171 cacgtgtcatccagtcagccacgtgtacaaggaccaatttgac 213  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  7402069 cacgcgtcatccagtcagccacgtgtacaaagaccaatttgac 7402111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 490
Target Start/End: Complemental strand, 48851933 - 48851864
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttg 490  Q
    ||||| |||||||||| || ||| ||||||||||||| |||||  |||||||| |||| |||||||||||    
T  48851933 atccgcttctactcaaccccaatacatggagtttatcccaacctcaggatttccaaagtagtgatgcttg 48851864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 20479768 - 20479728
Alignment:
Q  61 gccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  20479768 gccaatttcgtccctgaatttttcgaaatatcaaattagtc 20479728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 366872 - 366915
Alignment:
Q  169 tccacgtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||    
T  366872 tccacatgtcatcccgtcagccacgtgtagaaggaccaatttga 366915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 487
Target Start/End: Complemental strand, 35402919 - 35402853
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgc 487  Q
    ||||| |||||||||| || ||| ||||||||||||| |||| | ||||||||||||  ||||||||    
T  35402919 atccgcttctactcaaccccaatacatggagtttatcccaactccaggatttctaaaacagtgatgc 35402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 487
Target Start/End: Complemental strand, 35692957 - 35692891
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgc 487  Q
    ||||| |||||||||| || ||| |||||||||||||||||| | |||||||| |||| | ||||||    
T  35692957 atccgcttctactcaaccccaatacatggagtttatctcaactccaggatttccaaagcattgatgc 35692891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 6602511 - 6602552
Alignment:
Q  171 cacgtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    ||||||||| |||| ||||||||||||||||||| |||||||    
T  6602511 cacgtgtcaaccaggcagccacgtgtacaaggactaatttga 6602552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 32839962 - 32840007
Alignment:
Q  412 ttatgggctatccgattctactcaatcctaattcatggagtttatc 457  Q
    |||||||| ||| | |||||||||| ||||||||||||||||||||    
T  32839962 ttatgggccatctggttctactcaaccctaattcatggagtttatc 32840007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 490
Target Start/End: Complemental strand, 37792616 - 37792571
Alignment:
Q  445 catggagtttatctcaaccctaggatttctaaagaagtgatgcttg 490  Q
    ||||||||||||| |||||| |||||||| |||| |||||||||||    
T  37792616 catggagtttatcccaaccccaggatttccaaagcagtgatgcttg 37792571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 475 - 807
Target Start/End: Original strand, 24285276 - 24285610
Alignment:
Q  475 aaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaattatc-ccccgagttaatgcctcatg-ttgag 572  Q
    |||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||  |||| | |||||||| |||| |||||    
T  24285276 aaagaagtgatgtttgacgcctgattaaattatgcttttggaaaatgtaatatttatacttgtttaaattatgtcccctaattaatgccccatggttgag 24285375  T
Q  573 tttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatgaaatgtatgacttatgactcgttaatgcctcata 672  Q
    |||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||    
T  24285376 tttctttttgcctatgtaatattcatacacttgtagtgtaatcactgaattacgacttatttgatggaatgtatgacctatgacttgttaatgtctcata 24285475  T
Q  673 gtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgtgtctct 772  Q
    |||   ||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24285476 gttggattgttttttgcctatgtaatgttcttacacttgtagtgcaatgactgaattacgacttatttgatggtataatcaaggatcaaattgtgtctct 24285575  T
Q  773 atacttttttactttattatgcacatatatgcacc 807  Q
      || ||||||||||||| ||||||||||||||||    
T  24285576 taacctttttactttattttgcacatatatgcacc 24285610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 410 - 551
Target Start/End: Complemental strand, 17808111 - 17807970
Alignment:
Q  410 agttatgggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgt 509  Q
    |||||||| | ||||| |||||||||| |||||||||||||||||||| |||||| |||||||| |||||||||||| ||||| | |||||||| ||||     
T  17808111 agttatggaccatccggttctactcaaccctaattcatggagtttatcccaaccccaggatttccaaagaagtgatgtttgatacttgattaaattatgc 17808012  T
Q  510 ttttggaaaatgtaatatttaaacttgtttaaattatccccc 551  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||    
T  17808011 ttttggaaaatgtaaaatttagacttgtttaaattatgcccc 17807970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 640 - 803
Target Start/End: Complemental strand, 17807926 - 17807762
Alignment:
Q  640 aatgtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatt 739  Q
    |||||||||||||||||| |||||| |  ||| |||  ||| |||||||||||| |||| ||||||||||||||| | ||||| |||||||| ||| |||    
T  17807926 aatgtatgacttatgacttgttaattctccatggttgggtttctttttgcctatgtaatattcttgcacttgtagcgtaatgattgaattacaactgatt 17807827  T
Q  740 tgatgatataatcaaggatcaaattgtgtctctat-acttttttactttattatgcacatatatg 803  Q
    | ||| ||||||||||||||||||||||||||| | | ||||||||||||||||||| |||||||    
T  17807826 ttatggtataatcaaggatcaaattgtgtctctttaatttttttactttattatgcatatatatg 17807762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 647 - 764
Target Start/End: Complemental strand, 10771398 - 10771281
Alignment:
Q  647 gacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgat 746  Q
    ||||||||||| ||||||| ||| |||||  ||| ||||||| |||| |||| ||  |||||||||| |||||||||||||||| |||||||||||||||    
T  10771398 gacttatgacttgttaatggctcttagttaggttgctttttgtctatgtaatatttgtgcacttgtaatgcaatgactgaattatgacttatttgatgat 10771299  T
Q  747 ataatcaaggatcaaatt 764  Q
    ||  ||||||||||||||    
T  10771298 attttcaaggatcaaatt 10771281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 17807893 - 17807826
Alignment:
Q  567 gttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttattt 634  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||| |||||||| ||| ||||    
T  17807893 gttgggtttctttttgcctatgtaatattcttgcacttgtagcgtaatgattgaattacaactgattt 17807826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 441 - 551
Target Start/End: Original strand, 10268912 - 10269025
Alignment:
Q  441 aattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatg----cctgattaaaatatgtttttggaaaatgtaatatttaaacttg 536  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||  ||||||    | |  |||||||||| |||||| |||||||||||||| |||||    
T  10268912 aattcatggagtttatcccaaccctcggatttccaaagaagtgatttttgatggaaacgtatttaaaatatgcttttgg-aaatgtaatatttagacttg 10269010  T
Q  537 tttaaattatccccc 551  Q
    ||| |||||| ||||    
T  10269011 tttcaattatgcccc 10269025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 576 - 639
Target Start/End: Complemental strand, 10771363 - 10771300
Alignment:
Q  576 ctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatga 639  Q
    ||||||| ||||||||||||  |||| ||||| || ||||||||||||| ||||||||||||||    
T  10771363 ctttttgtctatgtaatatttgtgcacttgtaatgcaatgactgaattatgacttatttgatga 10771300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 416 - 487
Target Start/End: Original strand, 29237777 - 29237848
Alignment:
Q  416 gggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgc 487  Q
    |||| ||||| |||||||||| || ||| ||||||||||||| |||| ||||||||||||||  ||||||||    
T  29237777 gggccatccgcttctactcaaccccaatacatggagtttatcccaactctaggatttctaaaacagtgatgc 29237848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 551
Target Start/End: Complemental strand, 11032122 - 11032009
Alignment:
Q  441 aattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatg----cctgattaaaatatgtttttggaaaatgtaatatttaaacttg 536  Q
    ||||||||||||||||  ||||||| ||||||| |||||||||||| ||| ||    | |  ||| |||||| |||||| |||||||||||||| |||||    
T  11032122 aattcatggagtttattccaaccctcggatttccaaagaagtgatgtttgttggaaacgtatttagaatatgcttttgg-aaatgtaatatttagacttg 11032024  T
Q  537 tttaaattatccccc 551  Q
    ||| |||||| ||||    
T  11032023 tttcaattatgcccc 11032009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 749
Target Start/End: Original strand, 11789701 - 11789802
Alignment:
Q  648 acttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgata 747  Q
    |||||||||| |||||||||  ||||||  ||| |||||| | |||  ||| ||| |||||||||||||||||||||  |||| | ||||||||||| ||    
T  11789701 acttatgacttgttaatgccctatagttgggttgctttttacatatgcaatattcctgcacttgtagtgcaatgacttgattatggcttatttgatggta 11789800  T
Q  748 ta 749  Q
    ||    
T  11789801 ta 11789802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 601753 - 601713
Alignment:
Q  61 gccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  601753 gccaatttcgtccctgaatttttcgaaatatcaaattagtc 601713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 805
Target Start/End: Original strand, 11789965 - 11790013
Alignment:
Q  757 atcaaattgtgtctctatacttttttactttattatgcacatatatgca 805  Q
    |||||| ||||||||| |||||||||||||| ||||||| |||||||||    
T  11789965 atcaaactgtgtctctttacttttttactttgttatgcaaatatatgca 11790013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 29239236 - 29239196
Alignment:
Q  61 gccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  29239236 gccaatttcgtccctaaatttttcgaaatatcaaattagtc 29239196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 546
Target Start/End: Original strand, 38884383 - 38884429
Alignment:
Q  499 ttaaaatatgtttttggaaaatgtaatatttaaacttgtttaaattat 546  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  38884383 ttaaaatatgcttttggaaa-tgtaatatttaaacttgtttgaattat 38884429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 17808217 - 17808175
Alignment:
Q  365 catgagaggactagttatttcaactgagaagtctacgcaaaca 407  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||    
T  17808217 catgagaggaccagttatttcaactaagaagtctgcgcaaaca 17808175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 29237197 - 29237231
Alignment:
Q  67 ttcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||||||| |||||||||||||||||||||||||    
T  29237197 ttcgtccctgaatttttcgaaatatcaaattagtc 29237231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 11788497 - 11788538
Alignment:
Q  171 cacgtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  11788497 cacgtgtcatatagtcagccatgtgtacaaggaccaatttga 11788538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 3e-78; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 598 - 806
Target Start/End: Original strand, 19997912 - 19998120
Alignment:
Q  598 tgcatttgtagtgtaatgactgaattacgacttatttgatgaaatgtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataa 697  Q
    |||| ||||||| ||| |||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||  |||  ||||||||||| |||    
T  19997912 tgcacttgtagtataaggactgagttacgacttatttgatggaatgtatgatttatgacttgttaatgcctcatagttgggttggtttttgcctatgtaa 19998011  T
Q  698 tgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgtgtctctatacttttttactttattatgcaca 797  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  19998012 tgttcttgcacttgtagtgcaatgactgaattacgacttatttgatggtataatcaaggatcaaattgtgtctctttacttttttactttattctgcaca 19998111  T
Q  798 tatatgcac 806  Q
    |||||||||    
T  19998112 tatatgcac 19998120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 567 - 807
Target Start/End: Original strand, 27076522 - 27076762
Alignment:
Q  567 gttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatgaaatgtatgacttatgactcgttaatgc 666  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||| |||| || ||| |||||||||||| ||||||  |||||||||| |||||||     
T  27076522 gttgggtttctttttgcctatgtaatattcctgcacttgtagtgtaacgactaaaatacaacttatttgatggaatgtactacttatgacttgttaatga 27076621  T
Q  667 ctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgt 766  Q
    |||||||||  ||| |||||||||||| |||||||||||||||||||||||| |||| ||| || ||||||||||||| ||||||||||||||||||| |    
T  27076622 ctcatagttgggttgctttttgcctatgtaatgttcttgcacttgtagtgcagtgaccgaactatgacttatttgatggtataatcaaggatcaaattat 27076721  T
Q  767 gtctctatacttttttactttattatgcacatatatgcacc 807  Q
    |||| | ||||||||||||||||| ||||||||| ||||||    
T  27076722 gtctttttacttttttactttattctgcacatatttgcacc 27076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 427 - 551
Target Start/End: Original strand, 27076320 - 27076444
Alignment:
Q  427 ttctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaata 526  Q
    |||||||||  |||||||||||||||||||| |||||| | |||||  |||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  27076320 ttctactcatccctaattcatggagtttatcccaaccccaagattttcaaagaagtgatgtttgatgcctgattaaattatgcttttggaaaatgtaata 27076419  T
Q  527 tttaaacttgtttaaattatccccc 551  Q
    |||| ||||||||||||||| ||||    
T  27076420 tttagacttgtttaaattatgcccc 27076444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 554 - 675
Target Start/End: Complemental strand, 9221111 - 9220989
Alignment:
Q  554 gttaatgcctcatg-ttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatgaaatgtatgactta 652  Q
    |||||||||||||| |||  ||||||||||| |||||||||||| |||| |||||||||||||| |||||| |||||||||||||| ||| |||||||||    
T  9221111 gttaatgcctcatggttggatttctttttgcttatgtaatattcctgcacttgtagtgtaatgattgaattgcgacttatttgatggaatatatgactta 9221012  T
Q  653 tgactcgttaatgcctcatagtt 675  Q
    ||||| |||||||||||||||||    
T  9221011 tgacttgttaatgcctcatagtt 9220989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 410 - 545
Target Start/End: Complemental strand, 9221290 - 9221156
Alignment:
Q  410 agttatgggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgt 509  Q
    |||||||||| ||||  |||||||||| | || ||||||||||||||| |||||  | |||||  ||||||||||| |||||||| |||||||| ||||     
T  9221290 agttatgggccatccagttctactcaaccatagttcatggagtttatcacaacctcatgattttcaaagaagtgatacttgatgc-tgattaaattatgc 9221192  T
Q  510 ttttggaaaatgtaatatttaaacttgtttaaatta 545  Q
    ||||| ||||||||||||||| ||||||||||||||    
T  9221191 ttttgaaaaatgtaatatttagacttgtttaaatta 9221156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 554 - 638
Target Start/End: Original strand, 19997973 - 19998058
Alignment:
Q  554 gttaatgcctcat-gttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatg 638  Q
    ||||||||||||| |||| |||  |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||    
T  19997973 gttaatgcctcatagttgggttggtttttgcctatgtaatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatg 19998058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 644 - 744
Target Start/End: Complemental strand, 9221126 - 9221026
Alignment:
Q  644 tatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgat 743  Q
    |||||||||||||| ||||||||||||| |||   || |||||||| ||| |||| ||| ||||||||||||| ||||| |||||| |||||||||||||    
T  9221126 tatgacttatgacttgttaatgcctcatggttggatttctttttgcttatgtaatattcctgcacttgtagtgtaatgattgaattgcgacttatttgat 9221027  T
Q  744 g 744  Q
    |    
T  9221026 g 9221026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 567 - 638
Target Start/End: Original strand, 19997842 - 19997913
Alignment:
Q  567 gttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatg 638  Q
    ||||||||||||||| |||||||||||||  |||| ||||||| ||| ||||||||||||||||||||||||    
T  19997842 gttgagtttctttttacctatgtaatattactgcacttgtagtataaggactgaattacgacttatttgatg 19997913  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 640 - 744
Target Start/End: Original strand, 27076489 - 27076593
Alignment:
Q  640 aatgtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatt 739  Q
    |||||||||||||||||| ||||||| | ||| |||  ||| |||||||||||| |||| ||| ||||||||||||| || |||| || ||| |||||||    
T  27076489 aatgtatgacttatgacttgttaatgtcccatggttgggtttctttttgcctatgtaatattcctgcacttgtagtgtaacgactaaaatacaacttatt 27076588  T
Q  740 tgatg 744  Q
    |||||    
T  27076589 tgatg 27076593  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 27076194 - 27076240
Alignment:
Q  362 tggcatgagaggactagttatttcaactgagaagtctacgcaaacac 408  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  27076194 tggcatgagaggactagttatttcaattgagaagtctacgcaaacac 27076240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 19997629 - 19997765
Alignment:
Q  410 agttatgggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttct-aaagaagtgatgcttgatgcctgattaaaatatg 508  Q
    |||||||||| |||| |||||| | || |||||||||||||||||||  ||||||  ||| || | ||||||||||||||||||       |||| ||||    
T  19997629 agttatgggccatcctattctatttaaccctaattcatggagtttattccaacccccggaattttcaaagaagtgatgcttgat-------taaattatg 19997721  T
Q  509 tttttggaaaatgtaatatttaaac-ttgtttaaattatccccc 551  Q
     ||||||||||||||||||||| || ||||||||||||| ||||    
T  19997722 cttttggaaaatgtaatatttagactttgtttaaattatgcccc 19997765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 19997817 - 19997913
Alignment:
Q  648 acttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatg 744  Q
    |||||||||| |||||||| | || ||| |||| |||||| ||||| |||| ||  ||||||||||||  || ||||||||||||||||||||||||    
T  19997817 acttatgacttgttaatgctttatggttgagtttctttttacctatgtaatattactgcacttgtagtataaggactgaattacgacttatttgatg 19997913  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 29620178 - 29620218
Alignment:
Q  61 gccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  29620178 gccaatttcgtccctgaatttttcgaaatatcaaattagtc 29620218  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 29621865 - 29621825
Alignment:
Q  61 gccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  29621865 gccaatttcgtccctgaatttttcgaaatatcaaattagtc 29621825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 40782260 - 40782220
Alignment:
Q  61 gccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  40782260 gccaatttcgtccctgaatttttcgaaatatcaaattagtc 40782220  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 27075994 - 27076037
Alignment:
Q  169 tccacgtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||    
T  27075994 tccacgtgtcatttagtcagccacgtgtataaggaccaatttga 27076037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 475
Target Start/End: Complemental strand, 2853916 - 2853862
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttcta 475  Q
    ||||| |||||||||| |||||| ||||||||||||| |||| | ||||||||||    
T  2853916 atccgcttctactcaaccctaatacatggagtttatcccaactccaggatttcta 2853862  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 40780596 - 40780630
Alignment:
Q  67 ttcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||||||| |||||||||||||||||||||||||    
T  40780596 ttcgtccctgaatttttcgaaatatcaaattagtc 40780630  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 2180315 - 2180372
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaag 478  Q
    ||||| |||||||||| || ||| ||||||||||||| |||| |||||||||| ||||    
T  2180315 atccgcttctactcaaccccaatacatggagtttatcccaactctaggatttccaaag 2180372  T

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Target: chr3 (Bit Score: 149; Significance: 3e-78; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 567 - 807
Target Start/End: Complemental strand, 22219513 - 22219273
Alignment:
Q  567 gttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatgaaatgtatgacttatgactcgttaatgc 666  Q
    |||| |||||||||| |||||||||||||| |||| |||||||||||||| |||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  22219513 gttgggtttctttttacctatgtaatattcctgcacttgtagtgtaatgattgaattacgatttatttgatggaatgtatgacttatgacttgttaatgc 22219414  T
Q  667 ctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgt 766  Q
    |||||||||  ||| |||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| |||||||    
T  22219413 ctcatagttgggttgctttttgcttatgtaatgtttttgcacttgtagtgcaatgattgaattacgacttatttgatggtatattcaaggattaaattgt 22219314  T
Q  767 gtctctatacttttttactttattatgcacatatatgcacc 807  Q
    || ||| ||||||| |||||| || ||||||||||||||||    
T  22219313 gtatctttacttttgtactttgttctgcacatatatgcacc 22219273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 640 - 805
Target Start/End: Complemental strand, 35862913 - 35862748
Alignment:
Q  640 aatgtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatt 739  Q
    ||||||||||| |||||| ||||||||| || ||||  ||| |||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||    
T  35862913 aatgtatgactcatgacttgttaatgccccacagttgggttgctttttgcctatgtaatattcctgcacttgtagtgtaatgactgaattacgacttatt 35862814  T
Q  740 tgatgatataatcaaggatcaaattgtgtctctatacttttttactttattatgcacatatatgca 805  Q
    ||||| | ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  35862813 tgatggtctaatcaaggatcaaattgtgtctctttacttttttactttgttctgcacatatatgca 35862748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 475 - 638
Target Start/End: Complemental strand, 23876760 - 23876595
Alignment:
Q  475 aaagaagtgatgcttgatgcctgattaaaat-atgtttttggaaaatgtaatatttaaacttgtttaaattatcccccg-agttaatgcctcatgttgag 572  Q
    ||||||||||||||||||||||||||||| | ||| ||||| ||||||||||  ||  ||||||||||||||| ||||  |||||||||| | ||||| |    
T  23876760 aaagaagtgatgcttgatgcctgattaaatttatgcttttgaaaaatgtaattgtttgacttgtttaaattatgccccatagttaatgccccttgttggg 23876661  T
Q  573 tttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatg 638  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  23876660 tttctttttgcgtatgtaatattcctgcacttgtagtgtaatgactgaattacgacttatttgatg 23876595  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 682 - 807
Target Start/End: Complemental strand, 23876657 - 23876529
Alignment:
Q  682 ctttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgtgtctctatac---tt 778  Q
    |||||||| ||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||   ||    
T  23876657 ctttttgcgtatgtaatattcctgcacttgtagtgtaatgactgaattacgacttatttgatggtataatcaaggatcaaattgtgtttctttacttttt 23876558  T
Q  779 ttttactttattatgcacatatatgcacc 807  Q
    |||||||||||||||||||||||||||||    
T  23876557 ttttactttattatgcacatatatgcacc 23876529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 410 - 551
Target Start/End: Complemental strand, 22219729 - 22219588
Alignment:
Q  410 agttatgggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgt 509  Q
    |||||||||  ||||| |||||||||| |||||||||||||||||||||||||||  ||||||  |||||||||||| ||||||||| |||||| ||||     
T  22219729 agttatgggtcatccggttctactcaaccctaattcatggagtttatctcaaccccgggattttcaaagaagtgatgtttgatgcctaattaaattatgc 22219630  T
Q  510 ttttggaaaatgtaatatttaaacttgtttaaattatccccc 551  Q
    |||| |||||||||||||||| ||||||||||||||| ||||    
T  22219629 ttttagaaaatgtaatatttagacttgtttaaattatgcccc 22219588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 421 - 551
Target Start/End: Complemental strand, 35863086 - 35862957
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaat 520  Q
    ||||| ||||||||||||| |||||||||||||||||  || |  |||||||  |||||||||||| ||||||||| |||||| |||| |||||||||||    
T  35863086 atccggttctactcaatcccaattcatggagtttatcctaatctcaggattttcaaagaagtgatgtttgatgcctaattaaattatgcttttggaaaat 35862987  T
Q  521 gtaatatttaaacttgtttaaattatccccc 551  Q
    |||||||||| || || ||||||||| ||||    
T  35862986 gtaatatttagac-tgcttaaattatgcccc 35862957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 567 - 638
Target Start/End: Complemental strand, 35862880 - 35862809
Alignment:
Q  567 gttgagtttctttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttatttgatg 638  Q
    |||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  35862880 gttgggttgctttttgcctatgtaatattcctgcacttgtagtgtaatgactgaattacgacttatttgatg 35862809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 443 - 551
Target Start/End: Original strand, 5126852 - 5126959
Alignment:
Q  443 ttcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaa 542  Q
    ||||||||||||||| |||| || || |||| ||||||||||| |||||||| || ||||| |||| |||||| || ||||||||||  |||||||||||    
T  5126852 ttcatggagtttatcccaactctcggctttccaaagaagtgatacttgatgcatgtttaaattatgcttttgg-aactgtaatatttcgacttgtttaaa 5126950  T
Q  543 ttatccccc 551  Q
    |||| ||||    
T  5126951 ttatgcccc 5126959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 443 - 551
Target Start/End: Original strand, 5134107 - 5134214
Alignment:
Q  443 ttcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaa 542  Q
    ||||||||||||||| |||| || || |||| ||||||||||| |||||||| || ||||| |||| |||||| || ||||||||||  |||||||||||    
T  5134107 ttcatggagtttatcccaactctcggctttccaaagaagtgatacttgatgcatgtttaaattatgcttttgg-aactgtaatatttcgacttgtttaaa 5134205  T
Q  543 ttatccccc 551  Q
    |||| ||||    
T  5134206 ttatgcccc 5134214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 643 - 744
Target Start/End: Complemental strand, 22219542 - 22219442
Alignment:
Q  643 gtatgacttatgactcgttaatgcctcatagtttagttactttttgcctatataatgttcttgcacttgtagtgcaatgactgaattacgacttatttga 742  Q
    |||||||||||||||  |||||||| ||| |||  ||| |||||| ||||| |||| ||| ||||||||||||| ||||| |||||||||| ||||||||    
T  22219542 gtatgacttatgacttcttaatgcc-catggttgggtttctttttacctatgtaatattcctgcacttgtagtgtaatgattgaattacgatttatttga 22219444  T
Q  743 tg 744  Q
    ||    
T  22219443 tg 22219442  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 25535199 - 25535156
Alignment:
Q  169 tccacgtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    |||||||||||||||||| ||||||| |||||||||||||||||    
T  25535199 tccacgtgtcatccagtcggccacgtctacaaggaccaatttga 25535156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 443 - 551
Target Start/End: Original strand, 41624767 - 41624874
Alignment:
Q  443 ttcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaa 542  Q
    ||||||||||||||| ||||    || |||| ||||||||||| |||||||| || ||||| |||  |||||| || ||||||||||  |||||||||||    
T  41624767 ttcatggagtttatcccaactgccggctttccaaagaagtgatacttgatgcatgtttaaattatacttttgg-aactgtaatatttcgacttgtttaaa 41624865  T
Q  543 ttatccccc 551  Q
    |||| ||||    
T  41624866 ttatgcccc 41624874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 421 - 517
Target Start/End: Original strand, 54093582 - 54093678
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaa 517  Q
    ||||| ||| ||||||||  | ||||||||||||||| ||||||   |||||| ||||||||||| |||||||| || ||| | |||| ||||||||    
T  54093582 atccggttcaactcaatctaagttcatggagtttatcccaacccccagatttccaaagaagtgatacttgatgcatgtttagattatgcttttggaa 54093678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 412
Target Start/End: Complemental strand, 22219823 - 22219788
Alignment:
Q  377 agttatttcaactgagaagtctacgcaaacaccagt 412  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22219823 agttatttcaaatgagaagtctacgcaaacaccagt 22219788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 487
Target Start/End: Original strand, 2660750 - 2660816
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgc 487  Q
    ||||| |||||||||| || ||| |||||||||||||||||| | |||||||| |||| | ||||||    
T  2660750 atccgcttctactcaaccccaatacatggagtttatctcaactccaggatttccaaagcattgatgc 2660816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 7e-36; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 695 - 804
Target Start/End: Original strand, 7150138 - 7150247
Alignment:
Q  695 taatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgtgtctctatacttttttactttattatgc 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||| ||||||||||| |||||||||||||| || | |    
T  7150138 taatgttcttgcacttgtagtgcaatgactgaattacgacttattttctggtataatcaaggatcatattgtgtctctttacttttttactttgttctac 7150237  T
Q  795 acatatatgc 804  Q
    ||||||||||    
T  7150238 acatatatgc 7150247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 410 - 545
Target Start/End: Complemental strand, 9590945 - 9590807
Alignment:
Q  410 agttatgggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatg----cctgattaaaat 505  Q
    |||||||| | ||||| ||| ||||||||  ||||||||||||||||| ||||||   |||||| |||||||||||||||||||    | |  |||||||    
T  9590945 agttatggtccatccggttcgactcaatctaaattcatggagtttatcccaacccccagatttccaaagaagtgatgcttgatgaaaacgtatttaaaat 9590846  T
Q  506 atgtttttggaaaatgtaatatttaaacttgtttaaatta 545  Q
    ||| |||| |||||||||||||| | |||||||| |||||    
T  9590845 atgctttt-gaaaatgtaatattcagacttgtttgaatta 9590807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 634
Target Start/End: Original strand, 7150127 - 7150183
Alignment:
Q  578 ttttgcctatgtaatattcttgcatttgtagtgtaatgactgaattacgacttattt 634  Q
    |||| ||| |||||| |||||||| |||||||| |||||||||||||||||||||||    
T  7150127 tttttcctgtgtaatgttcttgcacttgtagtgcaatgactgaattacgacttattt 7150183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 443 - 551
Target Start/End: Original strand, 44973512 - 44973619
Alignment:
Q  443 ttcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaaaatgtaatatttaaacttgtttaaa 542  Q
    ||||||||||||||| |||  |  || |||| ||||||||||| ||| |||| || ||||| ||||||||||| || ||||||||||  |||||||||||    
T  44973512 ttcatggagtttatcccaaatcccggctttccaaagaagtgatactttatgcatgtttaaattatgtttttgg-aactgtaatatttcgacttgtttaaa 44973610  T
Q  543 ttatccccc 551  Q
    |||| ||||    
T  44973611 ttatgcccc 44973619  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 411 - 551
Target Start/End: Original strand, 4614012 - 4614151
Alignment:
Q  411 gttatgggctatccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtt 510  Q
    ||||||||| ||||| ||| |||||| |  |||||||| || ||||| |||||  |||||||| |||||||||||| || ||  ||| ||||  |||| |    
T  4614012 gttatgggccatccggttcaactcaacctaaattcatgaagcttatcccaacctcaggatttccaaagaagtgatgtttaatatctgtttaagttatgct 4614111  T
Q  511 tttggaaaatgtaatatttaaacttgtttaaattatccccc 551  Q
    ||||| || | ||||||||  ||||||||||||||| ||||    
T  4614112 tttgg-aattttaatattttgacttgtttaaattatgcccc 4614151  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 7149955 - 7149998
Alignment:
Q  362 tggcatgagaggactagttatttcaactgagaagtctacgcaaa 405  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    
T  7149955 tggcataagaggaccaattatttcaactgagaagtctacgcaaa 7149998  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 7150081 - 7150114
Alignment:
Q  427 ttctactcaatcctaattcatggagtttatctca 460  Q
    |||||||||| |||||||||||||||||||||||    
T  7150081 ttctactcaaccctaattcatggagtttatctca 7150114  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 490
Target Start/End: Original strand, 49523651 - 49523720
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttg 490  Q
    ||||| |||||||||| || ||| ||||||||||||| |||| | |||||||| |||| | |||||||||    
T  49523651 atccgcttctactcaaccccaatacatggagtttatcccaactccaggatttccaaagcattgatgcttg 49523720  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 516
Target Start/End: Original strand, 50132514 - 50132587
Alignment:
Q  443 ttcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttgga 516  Q
    |||||||||||||||  |||||  || |||| ||||||||||| |||||||| || ||||| |||| |||||||    
T  50132514 ttcatggagtttatcctaacccctggctttccaaagaagtgatacttgatgcatgtttaaattatgcttttgga 50132587  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 490
Target Start/End: Original strand, 54386666 - 54386735
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaagaagtgatgcttg 490  Q
    ||||| |||||||||| || ||| ||||||||||||| |||  | |||||||| |||| |||||||||||    
T  54386666 atccgcttctactcaaccccaatacatggagtttatcccaattccaggatttccaaagtagtgatgcttg 54386735  T

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Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 693 - 807
Target Start/End: Complemental strand, 24431755 - 24431642
Alignment:
Q  693 tataatgttcttgcacttgtagtgcaatgactgaattacgacttatttgatgatataatcaaggatcaaattgtgtctctatacttttttactttattat 792  Q
    |||||| ||| | ||||||||||| |||||||| |||| |||||| || ||| |||||||||||||||||||| || ||  ||||||||||||| ||| |    
T  24431755 tataatattcctacacttgtagtgtaatgactggattatgacttactt-atggtataatcaaggatcaaattgggtttccttacttttttacttaattct 24431657  T
Q  793 gcacatatatgcacc 807  Q
    |||||||||||||||    
T  24431656 gcacatatatgcacc 24431642  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 516 - 592
Target Start/End: Complemental strand, 24548747 - 24548670
Alignment:
Q  516 aaaatgtaatatttaaacttgtttaaattatcccccgagttaatgcctcatg-ttgagtttctttttgcctatgtaat 592  Q
    ||||||||||||||| | ||||||||||||| |||| | ||||||| | ||| |||||||||||||||||||||||||    
T  24548747 aaaatgtaatatttagagttgtttaaattatgcccctaattaatgctttatggttgagtttctttttgcctatgtaat 24548670  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 3456788 - 3456828
Alignment:
Q  61 gccaaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  3456788 gccaatttcgtccctgaatttttcgaaatatcaaattagtc 3456828  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 32455969 - 32455933
Alignment:
Q  67 ttcgtcccttaatttttcgaaatatcaaattagtcac 103  Q
    ||||||||| |||||||||||||||||||||||||||    
T  32455969 ttcgtccctgaatttttcgaaatatcaaattagtcac 32455933  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 13613664 - 13613626
Alignment:
Q  63 caaattcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  13613664 caaattcgtccctgaattttgcgaaatatcaaattagtc 13613626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 443 - 517
Target Start/End: Complemental strand, 25170915 - 25170841
Alignment:
Q  443 ttcatggagtttatctcaaccctaggatttctaaagaagtgatgcttgatgcctgattaaaatatgtttttggaa 517  Q
    ||||| ||||||||| ||||||  | ||||||||||||||||| |||||||| || ||| | |||| ||||||||    
T  25170915 ttcattgagtttatcccaacccacgaatttctaaagaagtgatacttgatgcatgtttagattatgattttggaa 25170841  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 31209040 - 31209078
Alignment:
Q  174 gtgtcatccagtcagccacgtgtacaaggaccaatttga 212  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  31209040 gtgtcatcaagtcagccacgtgtacaaggaccattttga 31209078  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 11355749 - 11355806
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaag 478  Q
    ||||| |||||||||| || ||| ||||||||||||| |||| |||||||||| ||||    
T  11355749 atccgcttctactcaaccccaatacatggagtttatcccaactctaggatttccaaag 11355806  T

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Target: scaffold0081 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 54301 - 54267
Alignment:
Q  67 ttcgtcccttaatttttcgaaatatcaaattagtc 101  Q
    ||||||||| |||||||||||||||||||||||||    
T  54301 ttcgtccctgaatttttcgaaatatcaaattagtc 54267  T

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Target: scaffold0345 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 102 - 159
Alignment:
Q  421 atccgattctactcaatcctaattcatggagtttatctcaaccctaggatttctaaag 478  Q
    ||||| |||||||||| || ||| ||||||||||||| |||| |||||||||| ||||    
T  102 atccgcttctactcaaccccaatacatggagtttatcccaactctaggatttccaaag 159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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