View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2624-Insertion-3 (Length: 759)

Name: NF2624-Insertion-3
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2624-Insertion-3
NF2624-Insertion-3
[»] chr4 (25 HSPs)
chr4 (292-759)||(34344085-34344552)
chr4 (207-260)||(13588608-13588661)
chr4 (426-495)||(18912932-18913001)
chr4 (178-259)||(20316295-20316376)
chr4 (203-260)||(17661840-17661897)
chr4 (163-260)||(17108608-17108705)
chr4 (187-260)||(25118000-25118074)
chr4 (208-260)||(9849862-9849914)
chr4 (163-259)||(12246674-12246770)
chr4 (193-260)||(11252268-11252335)
chr4 (225-260)||(23975730-23975765)
chr4 (187-260)||(10108137-10108211)
chr4 (163-260)||(16928814-16928911)
chr4 (291-361)||(20361012-20361082)
chr4 (208-260)||(14573339-14573392)
chr4 (312-361)||(16924462-16924511)
chr4 (636-705)||(18913128-18913197)
chr4 (187-260)||(19547185-19547258)
chr4 (208-260)||(9053896-9053948)
chr4 (208-260)||(25024997-25025049)
chr4 (189-260)||(18447575-18447646)
chr4 (188-260)||(7613626-7613699)
chr4 (178-259)||(10089570-10089651)
chr4 (208-256)||(19883666-19883715)
chr4 (208-260)||(20828293-20828346)
[»] chr6 (24 HSPs)
chr6 (291-755)||(3017805-3018260)
chr6 (164-260)||(32759859-32759955)
chr6 (171-256)||(16175673-16175758)
chr6 (163-260)||(10822127-10822223)
chr6 (208-260)||(27961104-27961156)
chr6 (177-256)||(16167712-16167791)
chr6 (188-260)||(17383648-17383720)
chr6 (189-260)||(21079856-21079927)
chr6 (210-260)||(20404167-20404217)
chr6 (163-260)||(22564659-22564756)
chr6 (163-260)||(14723575-14723671)
chr6 (292-361)||(31519894-31519963)
chr6 (189-260)||(9339113-9339184)
chr6 (312-355)||(28902846-28902889)
chr6 (210-255)||(9507426-9507472)
chr6 (210-256)||(21060560-21060606)
chr6 (166-260)||(30356153-30356247)
chr6 (312-361)||(4449230-4449278)
chr6 (292-361)||(4968258-4968327)
chr6 (208-260)||(9898021-9898074)
chr6 (208-260)||(13216459-13216512)
chr6 (312-361)||(13338109-13338158)
chr6 (312-361)||(13507563-13507611)
chr6 (292-361)||(17311449-17311518)
[»] chr5 (18 HSPs)
chr5 (291-759)||(37278276-37278736)
chr5 (192-260)||(17831583-17831651)
chr5 (163-254)||(24263860-24263951)
chr5 (188-260)||(28254781-28254853)
chr5 (208-260)||(26253359-26253411)
chr5 (206-260)||(18939410-18939465)
chr5 (189-258)||(19761716-19761785)
chr5 (163-260)||(19006958-19007056)
chr5 (189-260)||(19052991-19053063)
chr5 (208-254)||(34488753-34488800)
chr5 (206-260)||(18227502-18227556)
chr5 (163-260)||(23387657-23387754)
chr5 (207-260)||(26348332-26348386)
chr5 (212-260)||(15520865-15520914)
chr5 (207-260)||(23338831-23338884)
chr5 (187-260)||(29989135-29989208)
chr5 (312-361)||(33891917-33891965)
chr5 (312-361)||(37574902-37574950)
[»] chr7 (23 HSPs)
chr7 (292-567)||(46419943-46420196)
chr7 (660-759)||(46420229-46420328)
chr7 (163-260)||(2506920-2507017)
chr7 (207-260)||(9722341-9722394)
chr7 (292-361)||(7306100-7306169)
chr7 (208-260)||(1254850-1254902)
chr7 (187-260)||(8038909-8038983)
chr7 (292-361)||(1534009-1534078)
chr7 (208-260)||(5046988-5047040)
chr7 (291-355)||(19764428-19764492)
chr7 (177-260)||(4900454-4900537)
chr7 (187-260)||(2505733-2505807)
chr7 (163-260)||(8317551-8317648)
chr7 (312-361)||(41201843-41201892)
chr7 (290-361)||(21781054-21781124)
chr7 (309-359)||(6649008-6649058)
chr7 (291-361)||(7916207-7916277)
chr7 (187-260)||(24751333-24751404)
chr7 (208-260)||(9079036-9079089)
chr7 (312-361)||(18342011-18342059)
chr7 (187-252)||(20175992-20176057)
chr7 (208-260)||(21502744-21502797)
chr7 (312-361)||(38705937-38705985)
[»] chr8 (23 HSPs)
chr8 (165-260)||(35861574-35861668)
chr8 (163-260)||(28904077-28904174)
chr8 (163-259)||(13833713-13833809)
chr8 (207-260)||(14077013-14077066)
chr8 (163-260)||(24090988-24091084)
chr8 (163-260)||(24851054-24851151)
chr8 (292-362)||(44462714-44462784)
chr8 (292-362)||(44470245-44470315)
chr8 (292-361)||(11722660-11722729)
chr8 (208-260)||(24518741-24518793)
chr8 (189-260)||(15176567-15176638)
chr8 (312-361)||(16375930-16375979)
chr8 (195-260)||(17649692-17649757)
chr8 (189-260)||(24109169-24109241)
chr8 (209-260)||(24381481-24381533)
chr8 (289-361)||(35631430-35631502)
chr8 (206-260)||(17976128-17976182)
chr8 (163-260)||(18570419-18570516)
chr8 (188-260)||(7985007-7985080)
chr8 (290-355)||(9763183-9763248)
chr8 (208-260)||(14271731-14271784)
chr8 (212-260)||(19784938-19784987)
chr8 (208-260)||(30117812-30117865)
[»] scaffold0086 (2 HSPs)
scaffold0086 (163-260)||(12903-13000)
scaffold0086 (189-260)||(11983-12054)
[»] chr1 (24 HSPs)
chr1 (293-359)||(44407448-44407514)
chr1 (163-260)||(14235394-14235491)
chr1 (163-260)||(26652468-26652563)
chr1 (187-260)||(10063094-10063167)
chr1 (188-260)||(27116357-27116429)
chr1 (191-260)||(27911955-27912025)
chr1 (292-361)||(2399595-2399664)
chr1 (208-260)||(16786247-16786300)
chr1 (208-260)||(21848516-21848569)
chr1 (188-260)||(26101750-26101823)
chr1 (187-260)||(31260760-31260833)
chr1 (292-361)||(34678676-34678745)
chr1 (189-260)||(17016967-17017039)
chr1 (189-259)||(13267736-13267807)
chr1 (190-260)||(16915332-16915403)
chr1 (163-260)||(33192242-33192339)
chr1 (208-260)||(7881685-7881738)
chr1 (208-260)||(15526950-15527003)
chr1 (188-260)||(15542442-15542515)
chr1 (208-260)||(15811599-15811652)
chr1 (177-250)||(24464518-24464590)
chr1 (208-260)||(25959611-25959664)
chr1 (208-256)||(35133778-35133827)
chr1 (312-361)||(49329536-49329585)
[»] chr3 (17 HSPs)
chr3 (290-359)||(47165461-47165530)
chr3 (178-260)||(3002947-3003029)
chr3 (208-260)||(26092794-26092846)
chr3 (291-361)||(33908890-33908960)
chr3 (312-361)||(18554392-18554441)
chr3 (312-361)||(23702340-23702389)
chr3 (312-361)||(23720796-23720845)
chr3 (312-361)||(23739252-23739301)
chr3 (209-260)||(18735425-18735477)
chr3 (189-260)||(19387985-19388057)
chr3 (208-260)||(20886759-20886811)
chr3 (189-260)||(31284039-31284111)
chr3 (189-260)||(8881536-8881607)
chr3 (208-260)||(3114863-3114916)
chr3 (208-260)||(5509959-5510012)
chr3 (207-260)||(15669438-15669491)
chr3 (187-256)||(23054711-23054779)
[»] scaffold0072 (1 HSPs)
scaffold0072 (163-260)||(38181-38278)
[»] scaffold0669 (1 HSPs)
scaffold0669 (291-361)||(6839-6909)
[»] chr2 (19 HSPs)
chr2 (207-260)||(32130854-32130907)
chr2 (292-361)||(35593211-35593280)
chr2 (187-260)||(34369217-34369291)
chr2 (292-361)||(4969050-4969119)
chr2 (187-260)||(8501644-8501717)
chr2 (290-355)||(11882222-11882287)
chr2 (163-260)||(17199417-17199513)
chr2 (207-260)||(32138067-32138120)
chr2 (163-260)||(32141501-32141598)
chr2 (187-256)||(32438814-32438883)
chr2 (208-260)||(16042815-16042867)
chr2 (208-260)||(29717510-29717562)
chr2 (207-261)||(18553178-18553233)
chr2 (163-260)||(25537446-25537543)
chr2 (187-260)||(27871175-27871249)
chr2 (163-260)||(34574403-34574500)
chr2 (208-260)||(19198631-19198684)
chr2 (209-258)||(22627277-22627326)
chr2 (292-361)||(37393270-37393339)
[»] scaffold0179 (1 HSPs)
scaffold0179 (438-522)||(11348-11433)
[»] scaffold0005 (1 HSPs)
scaffold0005 (208-260)||(243984-244037)
[»] scaffold0573 (1 HSPs)
scaffold0573 (312-355)||(6905-6948)
[»] scaffold0062 (1 HSPs)
scaffold0062 (205-260)||(41688-41743)
[»] scaffold0637 (1 HSPs)
scaffold0637 (190-260)||(7276-7346)
[»] scaffold0016 (1 HSPs)
scaffold0016 (163-260)||(4714-4811)
[»] scaffold0258 (1 HSPs)
scaffold0258 (188-260)||(20385-20458)
[»] scaffold0214 (1 HSPs)
scaffold0214 (292-361)||(388-456)
[»] scaffold0043 (1 HSPs)
scaffold0043 (231-260)||(88614-88643)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 292 - 759
Target Start/End: Complemental strand, 34344552 - 34344085
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccaggagcaaagccaggggacgtccttggaaaaat 391  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  34344552 cactacaagaaatctgttcatttgtcagggattttgacaaggccttgaaacccctggcaaatttcccaggagcaaagccaggggacgtccctgggaaaat 34344453  T
Q  392 gacttcaggaaaagtgggacactgttcacgtaaaacaggggtttgaccctggcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaattt 491  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  34344452 gacttcaggaaaagtgggacactgttcacgtaaaacaggggtttaaccctggcaaaatgaaacaaccccgggcaaattgcaagcgggaaagttgaaattt 34344353  T
Q  492 aaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttttcactcctttattgcttaannnnnnnnnnnnnnattgaaacaa 591  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||              ||||||||||    
T  34344352 aaattgagacaagagcagatggaagtggcagagagtacagaccatttgtttactttttcactattttattgcttaa-tttttatttttttattgaaacaa 34344254  T
Q  592 atacccaccacacacgttatctttccttca-nnnnnnnnggattcattgatttggtcgaccatacaaatacacacattacaacattttattttatcactt 690  Q
    ||| |||| |||||||||||||||||||||         ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  34344253 atatccacaacacacgttatctttccttcatttttttttggattcattgatttggtggaccatacaaatacacacattagaacattttattttatcactt 34344154  T
Q  691 gttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 759  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34344153 gttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 34344085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 13588661 - 13588608
Alignment:
Q  207 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  13588661 aaaacatagcaattatagggtgttttgatgtaatccacaaagaaatcatgcaaa 13588608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 426 - 495
Target Start/End: Original strand, 18912932 - 18913001
Alignment:
Q  426 acaggggtttgaccctggcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaatttaaat 495  Q
    ||||||||||| ||||  ||||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  18912932 acaggggtttgtccctcacaaaaggaaacaacccctggtaaattgcaagcgggaaaattgaaattcaaat 18913001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 20316295 - 20316376
Alignment:
Q  178 tatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaa 259  Q
    |||||| | |||||||||||| ||||| |||||||| | |||| ||||||||||||||||||||||  ||||||||||||||    
T  20316295 tatttgagtcatgtaattctagtttttccaaaacattgtaattttatggtgttttgatgtaattcaagaagaaatcatgcaa 20316376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 17661897 - 17661840
Alignment:
Q  203 tttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||||||||| || |||||||||||||||||||  |||||||||||||||    
T  17661897 tttcaaaacatagcaattctagggtgttttgatgtaattcaagaagaaatcatgcaaa 17661840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 17108705 - 17108608
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| ||||||| | | |||||||||| ||||  | ||||||||||||| ||||| ||||| || ||||||||| |||||||||||||||    
T  17108705 ttgtaatgttttttatatttgagtc-tgtaattctagttttcccgaaacatagcaattttatggggtttttgaagtaattcacgaagaaatcatgcaaa 17108608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 25118000 - 25118074
Alignment:
Q  187 catgtaattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| ||||| |  ||||||||||||| || |||||||||||||||||||  |||||||||||||||    
T  25118000 catgtaattctagtttttcctgaaacatagcaattctaaggtgttttgatgtaattcaagaagaaatcatgcaaa 25118074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 9849862 - 9849914
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || |||||||| ||||||||||| |||||||||||||||    
T  9849862 aaacatagcaattttagggtgtttttatgtaattcacgaagaaatcatgcaaa 9849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 12246674 - 12246770
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaa 259  Q
    ||||||||||||  ||| ||| | ||||||||| || | ||  | ||| ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  12246674 ttgtaatgttttctatacttgagtcatgtaattatattcttcccgaaatatagcaattttagggtattttgatgtaattcacaaagaaatcatgcaa 12246770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 11252268 - 11252335
Alignment:
Q  193 attctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||| ||||| | ||||||||||||| || || ||||||| ||||||||| |||||||||||||||    
T  11252268 attctagtttttccgaaacatagcaattttagggggttttgaagtaattcacgaagaaatcatgcaaa 11252335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 23975765 - 23975730
Alignment:
Q  225 ggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||||||||||||||||||||||||||    
T  23975765 ggtgttttgatgtaattcacaaagaaatcatgcaaa 23975730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 10108211 - 10108137
Alignment:
Q  187 catgtaattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||| || ||||| || |||||||| ||||||| ||||||||||||||||| |  |||||||||||||||    
T  10108211 catgtaattataatttttccagaaacatagtaattatagggtgttttgatgtaattgaagaagaaatcatgcaaa 10108137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 16928911 - 16928814
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||| ||||| ||||||||||||||| || ||  |||| || ||||||||| |||||||||||||||    
T  16928911 ttgtaatgttttctatatttgagtc-tgtaattctagtttttccaaaacatagcaattttaagggatttttgaagtaattcacgaagaaatcatgcaaa 16928814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 20361082 - 20361012
Alignment:
Q  291 acactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||| ||   | ||||| ||||||||||||| || |||||||||||||||||||||| ||||    
T  20361082 acactacaagaaacattaccttttgctagggattttgacagggtcttgaaacccctggcaaatttctcagg 20361012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 14573392 - 14573339
Alignment:
Q  208 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  14573392 aaacatagcaattttagtgtgtttttgatgtaattcacaaagaaatcatgcaaa 14573339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 16924511 - 16924462
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| |||||    
T  16924511 tttgctagggattttgacaagggtttgaaacccctggcaaatttgccagg 16924462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 705
Target Start/End: Original strand, 18913128 - 18913197
Alignment:
Q  636 attgatttggtcgaccatacaaatacacacattacaacattttattttatcacttgttatctctccaaag 705  Q
    ||||| ||||| |||| |||||||||||| || ||||| || | ||||| ||||||||||||||||||||    
T  18913128 attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaaag 18913197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 19547185 - 19547258
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| ||||  | ||||| | ||||| || |||||||||||||||||||  |||||||||||||||    
T  19547185 catgtaattctagttttcccgaaacaaaacaattctagggtgttttgatgtaattcaagaagaaatcatgcaaa 19547258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 9053948 - 9053896
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || ||| |||||||||||| ||| |||||||||||||||    
T  9053948 aaacatagcaattttagggtattttgatgtaatgcacgaagaaatcatgcaaa 9053896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 25025049 - 25024997
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||| |||| || |||||||| ||||||||||| |||||||||||||||    
T  25025049 aaacatagtaattttagggtgtttttatgtaattcacgaagaaatcatgcaaa 25024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 18447575 - 18447646
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| | || || ||||||| ||||| || |||||||| ||||||||||| || ||||||||||||    
T  18447575 tgtaattctattcttctcgaaacataacaattttagggtgttttaatgtaattcacgaacaaatcatgcaaa 18447646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 7613699 - 7613626
Alignment:
Q  188 atgtaattctacttttt-tcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||| ||||| || |||||| ||||||||  |||||||||| || |||||  |||||||||||||||    
T  7613699 atgtaattctagtttttctcgaaacatggcaattatggggtgttttgacgtgattcaagaagaaatcatgcaaa 7613626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 10089651 - 10089570
Alignment:
Q  178 tatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaa 259  Q
    |||||| | |||||||||| |  ||| ||||||||||| |||| || |||||||| || |||||||  ||||||||||||||    
T  10089651 tatttgagtcatgtaattccaggtttctcaaaacatagaaattctagggtgttttaatataattcaagaagaaatcatgcaa 10089570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 19883666 - 19883715
Alignment:
Q  208 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatg 256  Q
    |||||||| ||||||| |||||||| |||||||||||| |||||||||||    
T  19883666 aaacatagaaattatagggtgtttttgatgtaattcacgaagaaatcatg 19883715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 20828293 - 20828346
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || || ||| |||||||||||||| |||||||||||||||    
T  20828293 aaacatagcaattttagggcgttcttgatgtaattcacgaagaaatcatgcaaa 20828346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 302; Significance: 1e-169; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 291 - 755
Target Start/End: Complemental strand, 3018260 - 3017805
Alignment:
Q  291 acactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccaggagcaaagccaggggacgtccttggaaaaa 390  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||     
T  3018260 acactacaagaaatctgttcatttgccagggattttgacaaggccttgaagcccctggaaaatttcccaggagcagagccaggggacgtcctgggaaaa- 3018162  T
Q  391 tgacttcaggaaaagtgggacactgttcacgtaaaacaggggtttgaccctggcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaatt 490  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3018161 tgacttcagaaaaagtgggacactgttcatgtaaaacaggggtttgaccctggcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaact 3018062  T
Q  491 taaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttttcactcctttattgcttaannnnnnnnnnnnnnattgaaaca 590  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| |||||              |||||||||    
T  3018061 taaattgagacatgagcacatgggagtggcagagagtac--------tgtttactttttcactcctttattacttaa-tttttatttttttattgaaaca 3017971  T
Q  591 aatacccaccacacacgttatctttccttca-nnnnnnnnggattcattgatttggtcgaccatacaaatacacacattacaacattttattttatcact 689  Q
    |||||||||||||||| ||||||||||||||          |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3017970 aatacccaccacacacattatctttccttcattttttttttgattcattgatttggtggaccatacaaatacacacattacaacattttattttatcact 3017871  T
Q  690 tgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttctt 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017870 tgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttctt 3017805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 32759955 - 32759859
Alignment:
Q  164 tgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||  | ||||| | |||||||||||||||||  ||||||||||||||| || | |||||||||||||||||| |||||||||||||||    
T  32759955 tgtaatgttttctaaatttgagtcatgtaattctacttttcccaaaacatagcaattctaggatgttttgatgtaattcacgaagaaatcatgcaaa 32759859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 16175758 - 16175673
Alignment:
Q  171 tttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 256  Q
    ||||| ||||||| | ||||||||||||||||   |||||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  16175758 ttttttatatttgagtcatgtaattctactttccccaaaacatagtaattctatggtgttttgatgtaattcacgaagaaatcatg 16175673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 10822223 - 10822127
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||  |  ||||||||||| |||| | |||||||||||||| || ||||||||||||||||| || |||||||||||||||    
T  10822223 ttgtaatgttttctatatttttgttatgtaattctaattttcttaaaacatagcaattctagggtgttttgatgtaatt-acgaagaaatcatgcaaa 10822127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 27961156 - 27961104
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  27961156 aaacatagcaattctagggtgttttgatgtaattcacgaagaaatcatgcaaa 27961104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 16167791 - 16167712
Alignment:
Q  177 atatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 256  Q
    ||||||| | |||||||||||| ||||  || ||||||| ||||||| ||||||||||||||||||  ||||||||||||    
T  16167791 atatttgagtcatgtaattctaattttcccataacatagtaattatagggtgttttgatgtaattcttaaagaaatcatg 16167712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 17383720 - 17383648
Alignment:
Q  188 atgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||| ||||  ||||||||||||||| || || ||||||| ||||||| | |||||||||||||||    
T  17383720 atgtaattctagttttcccaaaacatagcaattttagggggttttgaagtaattcgcgaagaaatcatgcaaa 17383648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 21079856 - 21079927
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| | ||| | | |||||| |||| ||||||||||||||||||||||  |||||||||||||||    
T  21079856 tgtaattctattatttccgatacatagaaattttatggtgttttgatgtaattcaagaagaaatcatgcaaa 21079927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 20404167 - 20404217
Alignment:
Q  210 acatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||| ||||| |||| |||||||||||||||||| |||||||||||||||    
T  20404167 acataacaattttatgatgttttgatgtaattcacgaagaaatcatgcaaa 20404217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 22564659 - 22564756
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||  | || || ||||||||||||| || |||||| |||||||||||||| |||||||||||||||    
T  22564659 ttgtaatgttttctatatttgagtc-tgtaattctgttcttctcgaaacatagcaattttagggtgttgttgatgtaattcacgaagaaatcatgcaaa 22564756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 14723671 - 14723575
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||| |||||   ||||||||||||| || ||  |||||| ||||||||| |||||||||||||||    
T  14723671 ttgtaatgttttctatatttgagtc-tgtaattctagtttttctgaaacatagcaattttaggggtttttgaagtaattcacgaagaaatcatgcaaa 14723575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 31519894 - 31519963
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||||||    ||||||||||||||||||| ||  ||| |||||||||||||||| |||||    
T  31519894 cactacaagaaatatgacattttgccagggattttgacaggggtttggaacccctggcaaatttgccagg 31519963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 9339113 - 9339184
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| | ||| | ||||||||||||| || ||| |||||||||||||||  |||||||||| ||||    
T  9339113 tgtaattctattctttccgaaacatagcaattttagggtattttgatgtaattcatgaagaaatcattcaaa 9339184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 28902846 - 28902889
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaattt 355  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||    
T  28902846 tttgccagggattttgacaagggtttgaagcccctggcaaattt 28902889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 9507426 - 9507472
Alignment:
Q  210 acatagcaattatatggtgtttt-gatgtaattcacaaagaaatcat 255  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  9507426 acatagcaattatagggtgtttttgatgtaattcacgaagaaatcat 9507472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 21060560 - 21060606
Alignment:
Q  210 acatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 256  Q
    ||||||||||| || |||||||||||||||||||  |||||||||||    
T  21060560 acatagcaattttacggtgttttgatgtaattcaagaagaaatcatg 21060606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 30356247 - 30356153
Alignment:
Q  166 taatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||  |||| || | |||||||||||| | ||  | ||||||| ||||| || | ||||||||||||||||||  ||||||||||||||    
T  30356247 taatgttttatatatatgagtcatgtaattctattattcccgaaacatatcaattctaggatgttttgatgtaattcacggagaaatcatgcaaa 30356153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 4449278 - 4449230
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  4449278 tttgccagggattttgtcaaggt-ttgaaacccctggcaaatttgccagg 4449230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 4968258 - 4968327
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||  |||  | |||||||||||||||| |||||  ||||||||||| |||||||| |||||    
T  4968258 cactacaagaataatgaccttttgccagggattttgtcaagggtttgaaacccctcgcaaatttgccagg 4968327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 9898021 - 9898074
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || |||||| |||||||||||||| |||||||||| ||||    
T  9898021 aaacatagcaattttagggtgttcttgatgtaattcacgaagaaatcatacaaa 9898074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 13216459 - 13216512
Alignment:
Q  208 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    |||| |||||||| || |||||||| |||||||||| |||||||||||||||||    
T  13216459 aaacttagcaattctagggtgtttttgatgtaattcgcaaagaaatcatgcaaa 13216512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 13338158 - 13338109
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||| ||||||||||||||  ||||| |||||||||||||| |||||    
T  13338158 tttgccaaggattttgacaagggtttgaagcccctggcaaatttgccagg 13338109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 13507563 - 13507611
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  13507563 tttgccagggattttgtcaaggt-ttgaaacccctggcaaatttgccagg 13507611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 17311518 - 17311449
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||||||    ||||||||||||||||||| ||  ||| ||||||||| |||||| |||||    
T  17311518 cactacaagaaatatgacattttgccagggattttgacaggggtttggaacccctgggaaatttgccagg 17311449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 291 - 759
Target Start/End: Original strand, 37278276 - 37278736
Alignment:
Q  291 acactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccaggagcaaagccaggggacgtccttggaaaaa 390  Q
    |||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||| | || ||| ||||    
T  37278276 acactacaagaaatttgtccatttgccaaggattttgacagggccttgaaacccctgacaaattttcgaggagcaaagccaggggatgaccctgggaaaa 37278375  T
Q  391 tgacttcaggaaaagtgggacactgttcacgtaaaacaggggtttgaccctggcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaatt 490  Q
     |||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||| || |||||| ||  |||||||||||||||||||    
T  37278376 cgacttcagaaaaagtgagacacagttcacgtaaaacaggggtttaaccctggcaaaaagaaacaatccttggcaatttataagcgggaaaattgaaatt 37278475  T
Q  491 taaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttttcactcctttattgcttaannnnnnnnnnnnnnattgaaaca 590  Q
    ||||| |||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||               |||||||||    
T  37278476 taaatagagacaagagcacatgggagtggcagagagtgcaaaccatttgtttactttttcactcttttattgctta-------ttttttttattgaaaca 37278568  T
Q  591 aatacccaccacacac-gttatctttccttcannnnnnnnggattcattgatttggtcgaccatacaaatacacacattacaacattttattttatcact 689  Q
    |||||  || |||| | |||||||||||||||        | || |||||||||||| || |||||||||||||||||||||||||||| ||||||||||    
T  37278569 aatacaaacaacacgcggttatctttccttca--ttttttgtatccattgatttggtggatcatacaaatacacacattacaacattttcttttatcact 37278666  T
Q  690 tgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 759  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  37278667 tgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttgccattcttcctttttcctt 37278736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 17831651 - 17831583
Alignment:
Q  192 aattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||| |||||||  ||||||||||||||| || ||||||||||| || |||||||||||||||||||||    
T  17831651 aattatacttttcccaaaacatagcaattttagggtgttttgatatatttcacaaagaaatcatgcaaa 17831583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 24263860 - 24263951
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatca 254  Q
    ||||||||||||  ||||||| | | |||||||||| | ||| ||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  24263860 ttgtaatgttttctatatttgagtc-tgtaattctattctttccaaaacatagcaattttagggtgttcttgatgtaattcacaaagaaatca 24263951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 28254853 - 28254781
Alignment:
Q  188 atgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||||||  | ||||||||||||| | | ||||||||||| ||||||| |||||||||||||||    
T  28254853 atgtaattctacttttcccgaaacatagcaattctttagtgttttgatgcaattcacgaagaaatcatgcaaa 28254781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 26253411 - 26253359
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || |||||||||||||||||||| || ||||||||||||    
T  26253411 aaacatagcaattttagggtgttttgatgtaattcacgaaaaaatcatgcaaa 26253359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 18939465 - 18939410
Alignment:
Q  206 caaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||||| || |||||| |||||||||||||| |||||||||||||||    
T  18939465 caaaacatagcaattttagggtgttcttgatgtaattcacgaagaaatcatgcaaa 18939410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 19761716 - 19761785
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgca 258  Q
    |||||||||| | ||  ||||||||||||||| || | ||||||| |||||||||| |||||||||||||    
T  19761716 tgtaattctattcttcccaaaacatagcaattttaggatgttttgttgtaattcacgaagaaatcatgca 19761785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 19006958 - 19007056
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaatt--atatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||| |||| ||||||||||||||||  ||  |||||||| | ||||||||| ||||||| |||||||    
T  19006958 ttgtaatgttttctatatttgagtc-tgtaattctaattttctcaaaacatagcaatttgatggggtgttttaaagtaattcacgaagaaattatgcaaa 19007056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 19053063 - 19052991
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| ||||  ||||||||||||||| || || | |||||| ||||||||| |||||||||||||||    
T  19053063 tgtaattctagttttcccaaaacatagcaattttaggggggttttgaagtaattcacgaagaaatcatgcaaa 19052991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 34488800 - 34488753
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatca 254  Q
    ||||||||||||| || |||||| ||||||||||||||||||||||||    
T  34488800 aaacatagcaattttagggtgttcttgatgtaattcacaaagaaatca 34488753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 18227556 - 18227502
Alignment:
Q  206 caaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||| |||||||| || | ||||| |||||||||||| |||||||||||||||    
T  18227556 caaaacctagcaattttaggatgtttagatgtaattcacgaagaaatcatgcaaa 18227502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 23387657 - 23387754
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | ||||| |||| |||| | |||||||||||||| ||||| | ||||||  |||||||| |||||||||||||||    
T  23387657 ttgtaatgttttctatatttgagtc-tgtaaatctagttttcttaaaacatagcaattttatggggcttttgaaataattcacgaagaaatcatgcaaa 23387754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 26348386 - 26348332
Alignment:
Q  207 aaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||| ||||||||| || |||| |||||||||||||||| |||||||||||||||    
T  26348386 aaaaaatagcaattctagggtggttttgatgtaattcacgaagaaatcatgcaaa 26348332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 15520914 - 15520865
Alignment:
Q  212 atagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||| ||||||||||| |||||||||||  |||||||||||||||    
T  15520914 atagcaattttatggtgtttttgatgtaattcaagaagaaatcatgcaaa 15520865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 23338884 - 23338831
Alignment:
Q  207 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||||| ||| | ||||| | ||||||||| |||||||||||||||    
T  23338884 aaaacatagcaattttatagggttttaaagtaattcacgaagaaatcatgcaaa 23338831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 29989135 - 29989208
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| ||| |  |||||||| ||||| ||  || ||||||||||||||| ||||||||||| ||||    
T  29989135 catgtaattctaatttctcaaaaacataacaattctaaagtattttgatgtaattcaaaaagaaatcatacaaa 29989208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 33891965 - 33891917
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  33891965 tttgccagggattttgtcaaggt-ttgaaacccctggcaaatttgccagg 33891917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 37574950 - 37574902
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  37574950 tttgccagggattttgtcaaggt-ttgaaacccctggcaaatttgccagg 37574902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 1e-89; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 292 - 567
Target Start/End: Original strand, 46419943 - 46420196
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccaggagcaaagccaggggacgtccttggaaaaat 391  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  46419943 cactacaagaaatctgttcatttgtcagggattttgacaaggccttgaaacccctggcaaatttcccaagagcaaagtcaggggacgtccctgggaaaat 46420042  T
Q  392 gacttcaggaaaagtgggacactgttcacgtaaaacaggggtttgaccctggcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaattt 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||| |||||||||||||    
T  46420043 gacttcaggaaaagtgggacactgttcacgtaaaacaggggtttgaccctg--------------------gcaaattgcaagcggaaaaattgaaattt 46420122  T
Q  492 aaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttttcactcctttattgcttaa 567  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  46420123 aaattgagacatgagcacatgggagtggc--agagtacataccatttgtttactttttcactcctttattgcttaa 46420196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 660 - 759
Target Start/End: Original strand, 46420229 - 46420328
Alignment:
Q  660 acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 759  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46420229 acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 46420328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 2506920 - 2507017
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | |||||||||||| | ||  |||||||||| |||| || ||||||||||| |||||||| |||||||||||||||    
T  2506920 ttgtaatgttttctatatttgagtcatgtaattctattattcccaaaacatagaaattttagggtgttttgatctaattcacgaagaaatcatgcaaa 2507017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 9722394 - 9722341
Alignment:
Q  207 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  9722394 aaaacatagcaattatagggtgttttgatgtaatccacaaagaaatcatgcaaa 9722341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 7306169 - 7306100
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||  |||  ||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  7306169 cactacaagaataatgaccatttgccagggattttgacaagggtttgaaacccctggcaaatttgccagg 7306100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 1254850 - 1254902
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  1254850 aaacatagcaattatagggtgttttgatgtaattcacgaagaaatcaagcaaa 1254902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 8038983 - 8038909
Alignment:
Q  187 catgtaattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| ||||| |  ||||||||||||| || ||||||||||||||||||| ||||||||||| ||||    
T  8038983 catgtaattctagtttttcctgaaacatagcaattctagggtgttttgatgtaattcaaaaagaaatcatccaaa 8038909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 1534009 - 1534078
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||| |||  ||||||||| ||||||||||| || | ||||||||||||||||||| |||||    
T  1534009 cactacaagaaaaatgcacatttgccaaggattttgacagggacatgaaacccctggcaaatttgccagg 1534078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 5046988 - 5047040
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| ||  ||||||||||||||||||| |||||||||||||||    
T  5046988 aaacatagcaattttagagtgttttgatgtaattcacgaagaaatcatgcaaa 5047040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 19764492 - 19764428
Alignment:
Q  291 acactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaattt 355  Q
    ||||||||||||  |||  | ||||||||||||||||||||||  ||||||||||||||||||||    
T  19764492 acactacaagaataatgaccttttgccagggattttgacaagggtttgaaacccctggcaaattt 19764428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 4900454 - 4900537
Alignment:
Q  177 atatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||| | |||||||| ||||||||  | |||||||||||||||| ||||||||||  |||||  | |||||||||||||||    
T  4900454 atatttgtgtcatgtaatcctacttttccctaaacatagcaattatagggtgttttgacctaattaccgaagaaatcatgcaaa 4900537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 2505807 - 2505733
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatgg-tgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| ||||  | ||||||||||||| || || |||||||||||||||||  |||||||||||||||    
T  2505807 catgtaattctagttttcccgaaacatagcaattttaagggtgttttgatgtaattcaagaagaaatcatgcaaa 2505733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 8317551 - 8317648
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||| ||||| | |||||||||||||  | |||||||| || ||||||||| |||||||||||||||    
T  8317551 ttgtaatgttttctatatttgagtc-tgtaattctagtttttccgaaacatagcaatttgagggtgtttttgaagtaattcacgaagaaatcatgcaaa 8317648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 41201892 - 41201843
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||||||||||||  ||||| |||||||||||||| |||||    
T  41201892 tttgccagggattttgacaagggtttgaagcccctggcaaattttccagg 41201843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 21781124 - 21781054
Alignment:
Q  290 aacactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||  |||  | |||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  21781124 aacactacaagaataatgaccttttgccagggattttgtcaaggt-ttgaaacccctggcaaatttgccagg 21781054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 6649008 - 6649058
Alignment:
Q  309 tcatttgccagggattttgacaaggccttgaaacccctggcaaatttccca 359  Q
    |||||| ||||||||||||||| || | | |||||||||||||||||||||    
T  6649008 tcattttccagggattttgacaggggcataaaacccctggcaaatttccca 6649058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 7916207 - 7916277
Alignment:
Q  291 acactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||||||    ||| ||||||||||||||| ||  ||| |||||||||||||||| |||||    
T  7916207 acactacaagaaatatgacattttaccagggattttgacaggggtttggaacccctggcaaatttgccagg 7916277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 24751333 - 24751404
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| ||||   |||||||  ||||| || |||||||||||||||||||| |||||| ||||||||    
T  24751333 catgtaattctatttttccaaaaacat--caattctagggtgttttgatgtaattcacgaagaaaccatgcaaa 24751404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 9079036 - 9079089
Alignment:
Q  208 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||||||||  ||||| || ||||||||| |||||||||||||||    
T  9079036 aaacatagcaattatatgaggtttttgaagtaattcacgaagaaatcatgcaaa 9079089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 18342059 - 18342011
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  18342059 tttgccagggattttgtcaaggt-ttgaaacccctggcaaatttgccagg 18342011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 20176057 - 20175992
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaat 252  Q
    |||||||||||| ||||  | ||||| ||||||| || |||||||||||||||||||  |||||||    
T  20176057 catgtaattctaattttcccgaaacacagcaattctagggtgttttgatgtaattcatgaagaaat 20175992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 21502797 - 21502744
Alignment:
Q  208 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || |||||||| || ||||||||| |||||||||||||||    
T  21502797 aaacatagcaattctagggtgtttttgaggtaattcacgaagaaatcatgcaaa 21502744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 38705985 - 38705937
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  38705985 tttgccagggattttgtcaaggt-ttgaaacccctggcaaatttgccagg 38705937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 35861574 - 35861668
Alignment:
Q  165 gtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||  ||||||  | |||||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  35861574 gtaatgttttctatatttaagtcatgtaattctactttttccaaaacatagcaatc-tagggtgttttgatgtaattcacaaagaaatcatgcaaa 35861668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 28904077 - 28904174
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | ||||||||| || ||||    |||||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  28904077 ttgtaatgttttctatatttgagtcatgtaattatatttttcctgaaacatagcaattatatgatgttttgatgtaattcacgaacaaatcatgcaaa 28904174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 13833713 - 13833809
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaa 259  Q
    ||||||||||||  ||||||  | ||| ||||| |||||||  ||||||||| ||||| || ||||||||||||||||||||||| |||||||||||    
T  13833713 ttgtaatgttttctatattttagtcatataattatacttttcccaaaacataacaattctaaggtgttttgatgtaattcacaaataaatcatgcaa 13833809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 14077066 - 14077013
Alignment:
Q  207 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  14077066 aaaacatagcaattttatggtgttttgatgtaattcatgaagaaatcatgcaaa 14077013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 24090988 - 24091084
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||| |||| |||||||||||||||| || || | ||||| ||||||||| |||||||||||||||    
T  24090988 ttgtaatgttttctatatttgagtc-tgtaattctagttttctcaaaacatagcaattttaggggggtttgaagtaattcacgaagaaatcatgcaaa 24091084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 24851054 - 24851151
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  | ||||| | ||| |||||||| | ||  ||||||||||||||| || | ||||||||||||||||||||| ||||||||||||    
T  24851054 ttgtaatgttttctacatttgagtcatataattctattcttcccaaaacatagcaattttaggatgttttgatgtaattcacaaataaatcatgcaaa 24851151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 44462714 - 44462784
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagga 362  Q
    |||||||||||  |||  |||||||||||||||||||||||| | |||||||||||| |||||| ||||||    
T  44462714 cactacaagaataatgcccatttgccagggattttgacaaggacatgaaacccctgggaaattttccagga 44462784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 44470245 - 44470315
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagga 362  Q
    |||||||||||  |||  |||||||||||||||||||||||| | |||||||||||| |||||| ||||||    
T  44470245 cactacaagaataatgcccatttgccagggattttgacaaggacatgaaacccctgggaaattttccagga 44470315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 11722729 - 11722660
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||  |||  | ||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  11722729 cactacaagaataatgaccttttgccagggattttgacaagggtttgaaacccctggcaaatttgccagg 11722660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 24518741 - 24518793
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||| ||||| || |||||||| |||||||||||||||||||||||||||    
T  24518741 aaacataacaattttaaggtgttttcatgtaattcacaaagaaatcatgcaaa 24518793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 15176567 - 15176638
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| ||||  ||||||||||||||| || ||  |||||| ||||||||| |||||||||||||||    
T  15176567 tgtaattctagttttcccaaaacatagcaattttaggggtttttgaagtaattcacgaagaaatcatgcaaa 15176638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 16375979 - 16375930
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  16375979 tttgccagggattttgtcaagggtttgaaacccctggcaaatttgccagg 16375930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 17649757 - 17649692
Alignment:
Q  195 tctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||| || ||||||| ||||| || | ||||||||||||||| || |||||||||||||||    
T  17649757 tctacttttctcgaaacatatcaattctaggatgttttgatgtaatttacgaagaaatcatgcaaa 17649692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 24109169 - 24109241
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| ||||  || |||||||||||| || || ||||| || |||||||||||||||||||||||||    
T  24109169 tgtaattctagttttcccagaacatagcaattttagggggtttttgaagtaattcacaaagaaatcatgcaaa 24109241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 24381481 - 24381533
Alignment:
Q  209 aacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  24381481 aacatagcaattttagggtgtttttgatgtaattcacgaagaaatcatgcaaa 24381533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 35631502 - 35631430
Alignment:
Q  289 taacactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||||| ||   |||||||||| |||||||||| ||  ||||||||||||| |||||| |||||    
T  35631502 taacactacaagaaacattaccatttgccagagattttgacaggggtttgaaacccctggaaaatttaccagg 35631430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 17976182 - 17976128
Alignment:
Q  206 caaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| || |  |||||||||||||||||||  |||||||||||||||    
T  17976182 caaaacatagcatttcttgggtgttttgatgtaattcaataagaaatcatgcaaa 17976128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 18570516 - 18570419
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||| ||||  |||||||||||||||  | || ||||| || ||||||||| |||||||||||||||    
T  18570516 ttgtaatgttttctatatttgagtc-tgtaattctagttttcccaaaacatagcaatttgagggggtttttgaagtaattcacgaagaaatcatgcaaa 18570419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 7985080 - 7985007
Alignment:
Q  188 atgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||| | || || ||||||||||||| || |||||| |||| ||||||||| ||||||||| |||||    
T  7985080 atgtaattctattcttctcgaaacatagcaattttagggtgttcttgaagtaattcacgaagaaatcaagcaaa 7985007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 9763183 - 9763248
Alignment:
Q  290 aacactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaattt 355  Q
    |||||||||||||  |||  | |||||||||||||||| |||||  ||||||||| ||||||||||    
T  9763183 aacactacaagaataatgaccttttgccagggattttgtcaagggtttgaaacccttggcaaattt 9763248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 14271784 - 14271731
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||| |||| || |||||| |||||||||||||| |||||||||||||||    
T  14271784 aaacatagaaattttagggtgttcttgatgtaattcacgaagaaatcatgcaaa 14271731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 19784938 - 19784987
Alignment:
Q  212 atagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  19784938 atagcaattttagggtgtttttgatgtaattcacgaagaaatcatgcaaa 19784987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 30117812 - 30117865
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || |||||| |||| ||||||||| |||||||||||||||    
T  30117812 aaacatagcaattttagggtgttcttgaggtaattcacgaagaaatcatgcaaa 30117865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 12903 - 13000
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| ||||||| | ||||| |||||||||||    ||||||||||||| || | |||||||||||||||||||||||||||| |||||    
T  12903 ttgtaatgtttttcatatttgagtcatgttattctacttttcctgaaacatagcaattctaggatgttttgatgtaattcacaaagaaatcaagcaaa 13000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 12054 - 11983
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| | ||  ||||||||||||||| || ||||||||||| ||||| || |||||||||| ||||    
T  12054 tgtaattctattcttcccaaaacatagcaattctagggtgttttgatttaatttacgaagaaatcatacaaa 11983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 44407448 - 44407514
Alignment:
Q  293 actacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttccca 359  Q
    ||||||||||||||| |||||||||| ||||||||||| || | |||||||||||||||||||||||    
T  44407448 actacaagaaatatgctcatttgccaaggattttgacagggacatgaaacccctggcaaatttccca 44407514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 14235394 - 14235491
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | ||||||||| || | ||  | ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  14235394 ttgtaatgttttctatatttgagtcatgtaattatattattcccgaaacatagcaattttagggtgttttgatgtaattcacgaagaaatcatgcaaa 14235491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 26652563 - 26652468
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||| |||||  ||||||| | |||||||||||| ||||  |||||  ||| ||||||| ||||||||||||||||| || |||||||||||||||    
T  26652563 ttgtaacgttttatatatttgagtcatgtaattctatttttcccaaaa--tagaaattataaggtgttttgatgtaatttacgaagaaatcatgcaaa 26652468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 10063094 - 10063167
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| ||||||||||||||| ||||| || | ||||||||||||||| || || ||||||| ||||    
T  10063094 catgtaattctatttttttcaaaacataacaattctaggatgttttgatgtaatttacgaataaatcatacaaa 10063167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 27116357 - 27116429
Alignment:
Q  188 atgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||| | ||  | ||||||||||||| || ||| |||| |||||||||||||||||||||||||||    
T  27116357 atgtaattctattcttcccgaaacatagcaattctagggtttttttatgtaattcacaaagaaatcatgcaaa 27116429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 27912025 - 27911955
Alignment:
Q  191 taattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||| |||||||  ||||||||||||| || |||||||||||||||||||  || ||||||||||||    
T  27912025 taattctagttttttcggaaacatagcaattctagggtgttttgatgtaattcaagaaaaaatcatgcaaa 27911955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 2399664 - 2399595
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||||||    ||||||||||||||||||||||  |||  ||||||||||||||| |||||    
T  2399664 cactacaagaaatatgacattttgccagggattttgacaagggtttggtacccctggcaaatttgccagg 2399595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 16786247 - 16786300
Alignment:
Q  208 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| ||||||||||| ||| |||||||| |||||||||||||||    
T  16786247 aaacatagcaattttatggtgtttttgatctaattcacgaagaaatcatgcaaa 16786300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 21848569 - 21848516
Alignment:
Q  208 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||| |||| || |||||||| ||||||||||||||||||||||||||||    
T  21848569 aaacatagaaattttagggtgtttttgatgtaattcacaaagaaatcatgcaaa 21848516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 26101823 - 26101750
Alignment:
Q  188 atgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||| | ||  | |||||||||||||||| |||| |||||||||| ||||| |||||||||||||||    
T  26101823 atgtaattctattcttcccgaaacatagcaattatagggtgtttttgatgtagttcacgaagaaatcatgcaaa 26101750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 31260760 - 31260833
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||| || ||||  ||||||||| ||||| || ||||||||||||||||| |  |||||||||||||||    
T  31260760 catgtaattatagttttcccaaaacatatcaattttaaggtgttttgatgtaatttaagaagaaatcatgcaaa 31260833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 34678745 - 34678676
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||  |||  | ||||||||||||||||||||||  |||| ||||||||||||||| |||||    
T  34678745 cactacaagaataatgaccttttgccagggattttgacaagggtttgatacccctggcaaatttgccagg 34678676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 17016967 - 17017039
Alignment:
Q  189 tgtaattctacttttttc-aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| ||||||| |||||||||||||| ||  ||||||||||||||| ||  || ||||||||||||    
T  17016967 tgtaattctagttttttccaaaacatagcaattctagagtgttttgatgtaatccaagaataaatcatgcaaa 17017039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 13267807 - 13267736
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaa 259  Q
    |||||||||| ||||  ||||||||| ||||| ||||| ||||| || ||||||||| ||||||||||||||    
T  13267807 tgtaattctagttttcccaaaacataacaattttatggggtttttgaagtaattcacgaagaaatcatgcaa 13267736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 16915332 - 16915403
Alignment:
Q  190 gtaattctacttttttcaaaacatagcaattatat-ggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||||| || |||||||||||||  |  ||| |||||| ||||||||| |||||||||||||||    
T  16915332 gtaattctacttttctcgaaacatagcaatttgagaggttttttgaagtaattcacgaagaaatcatgcaaa 16915403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 33192339 - 33192242
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||| | ||  | ||||||||||||| || |||||||| || ||||||||||||||||||| |||||    
T  33192339 ttgtaatgttttctatatttgagtc-tgtaattctattcttccctaaacatagcaattttagggtgtttttgaagtaattcacaaagaaatcaagcaaa 33192242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 7881738 - 7881685
Alignment:
Q  208 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || | |||||| |||||||||||| |||||||||||||||    
T  7881738 aaacatagcaattttaggatgtttttgatgtaattcacgaagaaatcatgcaaa 7881685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 15526950 - 15527003
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || | |||| ||| ||||||||||||||||||||||||||    
T  15526950 aaacatagcaattttaggatgttcttgttgtaattcacaaagaaatcatgcaaa 15527003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 15542442 - 15542515
Alignment:
Q  188 atgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||| ||||| | ||||||||||||| || || | |||||| ||||||||| ||||||||| |||||    
T  15542442 atgtaattctagtttttccgaaacatagcaattttaaggggtttttgaagtaattcacgaagaaatcacgcaaa 15542515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 15811599 - 15811652
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || || ||| |||||||||||||| |||||||||||||||    
T  15811599 aaacatagcaattttagggggttcttgatgtaattcacgaagaaatcatgcaaa 15811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 24464590 - 24464518
Alignment:
Q  177 atatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaa 250  Q
    ||||||| | ||||||||||||||||   | |||||||||||||||||| ||||||||| ||| |||| |||||    
T  24464590 atatttgagtcatgtaattctactttcc-cgaaacatagcaattatatgttgttttgatataactcacgaagaa 24464518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 25959611 - 25959664
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| ||||||||| ||||| |||||||| ||||||||| |||||    
T  25959611 aaacatagcaattttatggtgttcttgatttaattcacgaagaaatcaagcaaa 25959664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 35133827 - 35133778
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatg 256  Q
    ||||||||||||| || |||||| |||||||||||||| |||||||||||    
T  35133827 aaacatagcaattttagggtgttcttgatgtaattcacgaagaaatcatg 35133778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 49329585 - 49329536
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||||||| ||| |  |||||||||||||||||||| |||||    
T  49329585 tttgccagggattttgtcaatggtttgaaacccctggcaaatttgccagg 49329536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 47165461 - 47165530
Alignment:
Q  290 aacactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttccca 359  Q
    |||||||||||||||||| |||||||| ||||||||||||| || | ||||||||||||| |||||||||    
T  47165461 aacactacaagaaatatgctcatttgctagggattttgacagggacatgaaacccctggcgaatttccca 47165530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 3003029 - 3002947
Alignment:
Q  178 tatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||| | |||||||||||||||||    ||||||||||||| || |||||||||||||||||||  |||||||||||||||    
T  3003029 tatttgagtcatgtaattctacttttcctgaaacatagcaattctacggtgttttgatgtaattcaagaagaaatcatgcaaa 3002947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 26092846 - 26092794
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  26092846 aaacatagcaattctatggtgttttgatgtaattcaagaagaaatcatgcaaa 26092794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 33908960 - 33908890
Alignment:
Q  291 acactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||  |||  | ||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  33908960 acactacaagaataatgaccctttgccagggattttgacaagggtttgaaacccctggcaaatttgccagg 33908890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 18554441 - 18554392
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||||||||||||  ||||| |||||||||||||| |||||    
T  18554441 tttgccagggattttgacaagggtttgaagcccctggcaaatttgccagg 18554392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 23702340 - 23702389
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||||||||||||  ||||| |||||||||||||| |||||    
T  23702340 tttgccagggattttgacaagggtttgaagcccctggcaaattttccagg 23702389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 23720796 - 23720845
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||||||||||||  ||||| |||||||||||||| |||||    
T  23720796 tttgccagggattttgacaagggtttgaagcccctggcaaattttccagg 23720845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 23739252 - 23739301
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||||||||||||  ||||| |||||||||||||| |||||    
T  23739252 tttgccagggattttgacaagggtttgaagcccctggcaaattttccagg 23739301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 18735425 - 18735477
Alignment:
Q  209 aacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| || | |||| ||||||||||||||||||||||||||||||    
T  18735425 aacatagcaattttaggttgttcttgatgtaattcacaaagaaatcatgcaaa 18735477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 19387985 - 19388057
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| | ||  ||||||||| ||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  19387985 tgtaattctattcttcccaaaacatatcaattttatggtgttcttgatgtaattcacgaagaaatcattcaaa 19388057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 20886811 - 20886759
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||| |||||| || || ||||||||||||||||| |||||||||||||||    
T  20886811 aaacatggcaattttaaggcgttttgatgtaattcacgaagaaatcatgcaaa 20886759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 31284039 - 31284111
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||| | ||  ||||||||||||||| || |||||||| ||||||||| || |||||||||||||||    
T  31284039 tgtaattctattattcccaaaacatagcaattttagggtgtttttgatgtaattgacgaagaaatcatgcaaa 31284111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 8881536 - 8881607
Alignment:
Q  189 tgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||| || ||||  ||||| ||||||||| || || ||||||| ||||||||| |||||||||||||||    
T  8881536 tgtaattatagttttcccaaaatatagcaattttagggggttttgaagtaattcacgaagaaatcatgcaaa 8881607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 3114863 - 3114916
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || |||||| ||||||| |||||| |||||||||||||||    
T  3114863 aaacatagcaattttagggtgttcttgatgttattcacgaagaaatcatgcaaa 3114916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 5510012 - 5509959
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || | |||| |||||||||||||| |||||||||||||||    
T  5510012 aaacatagcaattttaggatgttcttgatgtaattcacgaagaaatcatgcaaa 5509959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 15669438 - 15669491
Alignment:
Q  207 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||||| || ||||||| | ||||||||| |||||||| |||||||    
T  15669438 aaaacatagcaattttagggtgtttcgttgtaattcaaaaagaaatgatgcaaa 15669491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 23054711 - 23054779
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 256  Q
    |||| ||||||||||||| | ||||||| ||||| || | | |||||||||||||||| |||||||||||    
T  23054711 catgaaattctacttttt-cgaaacatatcaattttaagatattttgatgtaattcacgaagaaatcatg 23054779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 38278 - 38181
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | |||||||||||  ||||  | ||||||| ||||| || |||||||||||||||||||| ||||||||| |||||    
T  38278 ttgtaatgttttctatatttgagtcatgtaattctctttttcccgaaacataacaattttagggtgttttgatgtaattcacgaagaaatcacgcaaa 38181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 6909 - 6839
Alignment:
Q  291 acactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    ||||||||||||  |||  | ||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  6909 acactacaagaataatgaccctttgccagggattttgacaaggttttgaaacccctggcaaatttgccagg 6839  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 32130854 - 32130907
Alignment:
Q  207 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||| ||||    
T  32130854 aaaacataacaattataggatgttttgatgtaattcacaaagaaatcatacaaa 32130907  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 35593211 - 35593280
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||  |||  | ||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  35593211 cactacaagaataatgaccctttgccagggattttgacaagggtttgaaacccctggcaaatttgccagg 35593280  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 34369291 - 34369217
Alignment:
Q  187 catgtaattcta-cttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| |||||  | ||||||||||||| |||||||||||||| |||||||  | |||||||||||||    
T  34369291 catgtaattctagcttttcccgaaacatagcaattttatggtgttttgatataattcaagatgaaatcatgcaaa 34369217  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 4969119 - 4969050
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||  |||  | |||||||| |||||||||||||  |||||||||||||||||||| |||||    
T  4969119 cactacaagaataatgaccctttgccagagattttgacaagggtttgaaacccctggcaaatttgccagg 4969050  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 8501644 - 8501717
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| ||||    |||||||  |||| || ||||||||||||||||||||||| ||||||||||||    
T  8501644 catgtaattctatttttcaagaaacatataaattttagggtgttttgatgtaattcacaaataaatcatgcaaa 8501717  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 11882287 - 11882222
Alignment:
Q  290 aacactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaattt 355  Q
    |||||||||||||  |||  | ||||||||||||||||||||||  |||| |||||||||||||||    
T  11882287 aacactacaagaataatgaccttttgccagggattttgacaagggtttgatacccctggcaaattt 11882222  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 17199513 - 17199417
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||| ||||  |||||||||||||||  | || ||||||| ||||||||  |||||||||||||||    
T  17199513 ttgtaatgttttctatatttgagtc-tgtaattctagttttcccaaaacatagcaatttgagggggttttgaagtaattcatgaagaaatcatgcaaa 17199417  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 32138067 - 32138120
Alignment:
Q  207 aaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||| |||||||| | |||||||| ||||||||| |||||||||||||||    
T  32138067 aaaacataacaattataggatgttttgacgtaattcacgaagaaatcatgcaaa 32138120  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 32141501 - 32141598
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | |||||||||| | | ||    ||||||||||||| || | |||||||||| ||||||| |||||||||||||||    
T  32141501 ttgtaatgttttctatatttgagtcatgtaattcaattcttcctgaaacatagcaattctaagatgttttgatgaaattcacgaagaaatcatgcaaa 32141598  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 32438814 - 32438883
Alignment:
Q  187 catgtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatg 256  Q
    ||||||| |||||||||  | ||||||||||||| || |||||||  ||||||||||| |||||||||||    
T  32438814 catgtaactctacttttcccgaaacatagcaattctagggtgtttaaatgtaattcacgaagaaatcatg 32438883  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 16042815 - 16042867
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || |||||||| ||||||||||  |||||||||||||||    
T  16042815 aaacatagcaattttagggtgttttaatgtaattcaagaagaaatcatgcaaa 16042867  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 29717510 - 29717562
Alignment:
Q  208 aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| || ||| |||||||||||||||| ||||||| |||||||    
T  29717510 aaacatagcaattctaaggttttttgatgtaattcacgaagaaataatgcaaa 29717562  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 18553233 - 18553178
Alignment:
Q  207 aaaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaag 261  Q
    |||||||||||||| ||||||||| || ||||||||||  ||||||||||||||||    
T  18553233 aaaacatagcaattttatggtgttcttaatgtaattcatgaagaaatcatgcaaag 18553178  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 25537543 - 25537446
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | |||||||||| ||||  | ||||||||||||| || || | |||||| ||||||||| |||||||||||||||    
T  25537543 ttgtaatgttttctatatttgagtc-tgtaattctagttttcccgaaacatagcaattttaggggggttttgaagtaattcacgaagaaatcatgcaaa 25537446  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 27871249 - 27871175
Alignment:
Q  187 catgtaattctacttttttca-aaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||| |||||||  ||||||| ||||| ||  ||||||||||||||||||   ||||||||||||||    
T  27871249 catgtaattctaattttttccgaaacataacaattctagagtgttttgatgtaattcaaggagaaatcatgcaaa 27871175  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 34574500 - 34574403
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| |  ||||||||||| ||||  | |||| |||||||| || || | |||||| |||||||||||||||||||||||||    
T  34574500 ttgtaatgttttatatatttgagt-atgtaattctagttttcccgaaacttagcaattttaggggggttttgaagtaattcacaaagaaatcatgcaaa 34574403  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 19198631 - 19198684
Alignment:
Q  208 aaacatagcaattatatggtgtt-ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| |  |||||| |||||| |||||||||||||||||||||||    
T  19198631 aaacatagcaatttttaggtgttcttgatgaaattcacaaagaaatcatgcaaa 19198684  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 22627326 - 22627277
Alignment:
Q  209 aacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgca 258  Q
    |||||||||||| || | ||||||| |||||||||| |||||||||||||    
T  22627326 aacatagcaattttaggatgttttgttgtaattcacgaagaaatcatgca 22627277  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 37393339 - 37393270
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||  |||  | ||||||| ||||||||||||||  |||| ||||||||||||||| |||||    
T  37393339 cactacaagaataatgaccttttgccaaggattttgacaagggtttgatacccctggcaaatttgccagg 37393270  T

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Target: scaffold0179 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 522
Target Start/End: Original strand, 11348 - 11433
Alignment:
Q  438 ccctggcaaaatgaaacaacccctggcaaattgcaa-gcgggaaaattgaaatttaaattgagacatgagcacatgggagtggcag 522  Q
    |||||||||| | ||| ||||||| ||||| || || | |||||||||||||||||||| |||||| |||||||||  ||||||||    
T  11348 ccctggcaaattaaaataaccccttgcaaaatgtaaagtgggaaaattgaaatttaaatggagacaagagcacatgaaagtggcag 11433  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 243984 - 244037
Alignment:
Q  208 aaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  243984 aaacatagcaattttagtgtgtttttgatgtaattcacaaagaaatcatgcaaa 244037  T

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Target: scaffold0573 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 6948 - 6905
Alignment:
Q  312 tttgccagggattttgacaaggccttgaaacccctggcaaattt 355  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||    
T  6948 tttgccagggattttgacaagggtttgaagcccctggcaaattt 6905  T

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Target: scaffold0062 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 41688 - 41743
Alignment:
Q  205 tcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    |||||||||||||||| || ||| |||||| |||| |||| |||||||||||||||    
T  41688 tcaaaacatagcaattttagggttttttgaggtaaatcacgaagaaatcatgcaaa 41743  T

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Target: scaffold0637 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 7346 - 7276
Alignment:
Q  190 gtaattctacttttttcaaaacatagcaattatatggtgttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||| ||||  | ||||||||||||| || |||||||  || |||||||| |||||||||||||||    
T  7346 gtaattctaattttcccgaaacatagcaattctagggtgtttacatctaattcacgaagaaatcatgcaaa 7276  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 4811 - 4714
Alignment:
Q  163 ttgtaatgtttttaatatttgcgccatgtaattctacttttttcaaaacatagcaattatatggtg-ttttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||  ||||||| | | ||||| |||| |||| | |||||||||||||| ||||| | ||||||  |||||||| |||||||||||||||    
T  4811 ttgtaatgttttctatatttgagtc-tgtaaatctagttttcttaaaacatagcaattttatggggcttttgaaataattcacgaagaaatcatgcaaa 4714  T

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Target: scaffold0258 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 20385 - 20458
Alignment:
Q  188 atgtaattctacttttttcaaaacatagcaattatatggtgtttt-gatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||| ||||  |||||||||||||||  | || ||||| || ||||||||| |||||||||||||||    
T  20385 atgtaattctagttttcccaaaacatagcaatttgagggggtttttgaagtaattcacgaagaaatcatgcaaa 20458  T

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Target: scaffold0214 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 456 - 388
Alignment:
Q  292 cactacaagaaatatgttcatttgccagggattttgacaaggccttgaaacccctggcaaatttcccagg 361  Q
    |||||||||||  |||  | |||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  456 cactacaagaataatggccttttgccagggattttgtcaagg-tttgaaacccctggcaaatttgccagg 388  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 88614 - 88643
Alignment:
Q  231 ttgatgtaattcacaaagaaatcatgcaaa 260  Q
    ||||||||||||||||||||||||||||||    
T  88614 ttgatgtaattcacaaagaaatcatgcaaa 88643  T

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