View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2624-Insertion-4 (Length: 654)
Name: NF2624-Insertion-4
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 654
Target Start/End: Complemental strand, 43893462 - 43892819
Alignment:
| Q |
8 |
ggacagatgaggaattcaagaaggccttgcaaagttgttacaaggctcttccggtggctggaaaattgattctttgtgaaccggtgttaccggagcagac |
107 |
Q |
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| T |
43893462 |
ggacagatgaagaattcaagaaggccttgcaaagttgttacaaggctcttccggtggccggaaaattgattctttgtgaaccggtgttaccggagcagac |
43893363 |
T |
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| Q |
108 |
cgatgagagtaaaagaacaagagcattgttggcagctgacatatggataatgacaatgtatagaaccaagggaaaacacagaactgaagaacaattcaaa |
207 |
Q |
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| T |
43893362 |
cgatgagagtaaaagaacaagagcattgttggcagctgacatatggataatgacaatgtatagaaccaagggaaaacacagaactgaagaacaattcaaa |
43893263 |
T |
|
| Q |
208 |
caacttggcatttctgctggttttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatctcataaatgagcagaagaaggctttg |
307 |
Q |
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| T |
43893262 |
caacttggcatttctgctggttttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatttcataaatgagcagaagaaggctttg |
43893163 |
T |
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| Q |
308 |
aagtgtgtggtgctttatgtggtgatggggaaaataataaggaactttgagctaagatgctaattaattggttactgtttccttgactgtgaataaatat |
407 |
Q |
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| T |
43893162 |
aagtgtgtggtgctttatgtgatgatggggaaaataataaggaactttgagctaagatgctaattaattggttactgtttccttgactgtgaataaatat |
43893063 |
T |
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| Q |
408 |
tcactcatcataaattttcacttttgtttcccttatttatcttttgctttaataaatagtaaaatttatctttcgcgttaggttcaccattgcaaccaac |
507 |
Q |
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| T |
43893062 |
tcactcatcataaattttcacttttgtttcccttatttatcttttgctttaataaa---taaaatttatctttcgcgttaggttcaccattgcaaccaac |
43892966 |
T |
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| Q |
508 |
gggaattgggtaattaggttgagaaatgttcaaatttcaaccgaaagtgaccactctgtgaatcttttcttggtggtcgttgtggccatcaatgtgtata |
607 |
Q |
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| T |
43892965 |
gggaattgggtaattaggttgagaaatgttcaaatttcaaccgaaaatgaccactctgtgaatcttttcttggtggtcgttgtggccatcaatgtgtata |
43892866 |
T |
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| Q |
608 |
gagatttcaaatgggaaaatatgtgaggcgggatgatggatttgagc |
654 |
Q |
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| T |
43892865 |
gagatttcaaatgggaaaatatgtgaggcgggatgatggatttgagc |
43892819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 43904054 - 43903743
Alignment:
| Q |
8 |
ggacagatgaggaattcaagaaggccttgcaaagttgttacaaggctcttccggtggctggaaaattgattctttgtgaaccggtgttaccggagcagac |
107 |
Q |
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|||||||||| |||| |||||||| |||||| | || |||||||||||||||||| |||||||||||| ||||||| || |||| |||||||| ||| |
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| T |
43904054 |
ggacagatgaagaatgcaagaaggtcttgcagaactgctacaaggctcttccggtgaacggaaaattgattgtttgtgagccagtgtcaccggagctgac |
43903955 |
T |
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| Q |
108 |
cgatgagagtaaaagaacaagagcattgttggcagctgacatatggataatgacaatgtatagaaccaagggaaaacacagaactgaagaacaattcaaa |
207 |
Q |
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|||||||||| |||||||||||||||||||| | | |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
43903954 |
cgatgagagtcaaagaacaagagcattgttgtcgggtgacatattcataatgacaatgtataaaactaagggaaaacacagaactgaagaacaattcaaa |
43903855 |
T |
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| Q |
208 |
caacttggcatttctgctggttttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatctcataaatgagcagaagaaggctttg |
307 |
Q |
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| T |
43903854 |
cagcttggcatttctgctggttttcttcgttttcgtgccttccacattgatccttattttcctgttctagaatttcagaaatgagcagaagaagcctttg |
43903755 |
T |
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| Q |
308 |
aagtgtgtggtg |
319 |
Q |
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||||||| |||| |
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| T |
43903754 |
aagtgtgcggtg |
43903743 |
T |
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