View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2624-Insertion-5 (Length: 601)
Name: NF2624-Insertion-5
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 8 - 601
Target Start/End: Original strand, 3544813 - 3545399
Alignment:
| Q |
8 |
ggctttgctggtccttccatgaatggaattgttaaggctgccatcaaggacagggttgtcaatgttgctcaagttaccagcaacacgctcgctttggtta |
107 |
Q |
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| T |
3544813 |
ggctttgctggtccttccatgaatggaattgttaaggctgccatcaaggacagggttgtcaatgttgctcaagttaccagcaacacactcgctttggtta |
3544912 |
T |
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| Q |
108 |
atcgctttgcctcaagccatcaaactgcagaaactccttaaatcggtctgttgtacttgttcaactgttttgtcaatgttttccctcaactgatgaaaag |
207 |
Q |
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| T |
3544913 |
atcgctttgcctcaagccatcgaactgcagaaactccttaaatcgttctgttgtacttgttcaactgttttgtcaatgttttccctcaactgatgaaaag |
3545012 |
T |
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| Q |
208 |
tctctcttctcaaaatctagattcagtcttgtgtggttctttttgatgcatgatgtatacaaaaatcatattctgagggtatttgtgtaatataggtgct |
307 |
Q |
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| T |
3545013 |
tctctcttctcaaaatctagattcagtcttgtgtggttctttttgatgcatgatgtatacaaaaatcatattctgagggtatttgtgtaatataggtgtt |
3545112 |
T |
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| Q |
308 |
tcttatggtgtattgaaacaggtttctgtattgaagaatgtgaaattactgtttagaattcatcaatctagtttcagtgaacgagtttatgaatctattg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3545113 |
tcttatggtgtattgaaacaggtttctgtattgaagaatgtgaaattactgtttagaattcatcaatctagtttcagtgaacgagtttatgaatcttttg |
3545212 |
T |
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| Q |
408 |
atttcaggataattgtgctgagtttttctatatccactgctagcttctgcactgtgcactaacattagtagttggacttatcgnnnnnnnnnnnnnnnnn |
507 |
Q |
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| T |
3545213 |
atttcaggataattgtgctgagtttttctatatccactgctagcttctgcactgtgcactaacattagtagttggacatatc-------aaaaaaaaaaa |
3545305 |
T |
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| Q |
508 |
nnncactagttgttggaatacaaaattctatttctagttttacaccaaagtgcttgttccatcttttaagacaattgcttgttcactttttgag |
601 |
Q |
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| T |
3545306 |
aaacactagttgttggaatacaaaattctatttctagttttacaccaaagtgcttgttccatcttttaagacaattgcttgttcactttttgag |
3545399 |
T |
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