View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2624-Insertion-8 (Length: 167)
Name: NF2624-Insertion-8
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624-Insertion-8 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 119; Significance: 4e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 28242566 - 28242440
Alignment:
| Q |
41 |
aagggagctttagtttaatataaaattattagtaatttgggatttgtgacatgttattcaattatatttgattgaatgtttggattggggtgagtttgat |
140 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28242566 |
aagggagccttagtttaatataaaattattagtaatttgggatttgtgacgtgttattcaattatatttgattgaatgtttggattggggtgagtttgat |
28242467 |
T |
|
| Q |
141 |
gaaattagttgtgtgttgaaaccatat |
167 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
28242466 |
gaaattagttgtgtgttgaaaccatat |
28242440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 9776970 - 9776915
Alignment:
| Q |
59 |
tataaaattattagtaatttgggatttgtgacatgttattcaattatatttgattg |
114 |
Q |
| |
|
||||||||||| | |||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
9776970 |
tataaaattatgactaatttggcattcatgacatgttattcaattgtatttgattg |
9776915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University