View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2624R-Insertion-11 (Length: 730)
Name: NF2624R-Insertion-11
Description: NF2624R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624R-Insertion-11 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 420 - 730
Target Start/End: Complemental strand, 10688446 - 10688144
Alignment:
| Q |
420 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttagatagtgaacccagaatgtgaatctga |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10688446 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttaggtagtgaacccagaatgtgaatctga |
10688347 |
T |
|
| Q |
520 |
ctgatcaaaaagtagtatttataggcatagaaaattattactattactttgagaaaacatttttcagaaaagttggggaatgaggaaagtgtatggaaaa |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10688346 |
ttgatcaaaaagtagtatttataggcatagaaaattattactattactatgagaaaacatttttcagaaaagttggggaat--------tgtatggaaaa |
10688255 |
T |
|
| Q |
620 |
tatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatcc |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10688254 |
tatacaaggagaataattgtgcaagtgttgtgggattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatgc |
10688155 |
T |
|
| Q |
720 |
ttgatcaactc |
730 |
Q |
| |
|
||||||||||| |
|
|
| T |
10688154 |
ttgatcaactc |
10688144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 10688877 - 10688552
Alignment:
| Q |
11 |
ctccaataccaatatgcgtgaaacttgttcgataccaatattatttgcatatttgagtttc-tttttatgatagaatcttgtttttt-attgacttacct |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
10688877 |
ctcctataccaatatgcgtgaaacttgttcgatatcaatattatttgcatatttgagtttcctttttatgaaagaatcttgtttttttattgacttacct |
10688778 |
T |
|
| Q |
109 |
taatttctgtaaaccgttgtatttgttacacttggtattgtatccgtacctatgcatcctaaggtaagagcatgtcgtccacatttgaataattaacttg |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10688777 |
taatttctttaaaccgttgtatttgttacacttggtattgtatccgtacctatgcatcctaaggtaagagcatgtcgtccacatttgaataattaacttg |
10688678 |
T |
|
| Q |
209 |
ctagatttgagtgcgaccggtgtcgttgttgaacttttggagacagcccattagggttctctagaaaggagaactgaactttactttggtggacttgaac |
308 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10688677 |
cgagatttgagtgcgaccggcgtcgttgttgaacttttggagacagccc-----------ctagaaaggagaactgaactttactttggtggacttgaac |
10688589 |
T |
|
| Q |
309 |
tgtgtttggttatggttaatcatatttctcgttttaa |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10688588 |
tgtgtttggttatggttaatcatatttctcgttttaa |
10688552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 575 - 730
Target Start/End: Complemental strand, 5445011 - 5444855
Alignment:
| Q |
575 |
aacatttttcagaaaagttggggaatgaggaaagtgtatggaaaatatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaact |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| || ||||||||||||||||||||| |
|
|
| T |
5445011 |
aacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattgggcaagtgttgagggattggcaatttccaaagaact |
5444912 |
T |
|
| Q |
675 |
tgaactgaggtt-cttgatttggcaatttccaatattcatagatccttgatcaactc |
730 |
Q |
| |
|
|| ||||||||| ||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
5444911 |
tggactgaggttgagggatttggcaatttcccatattcattgatccttgatcaactc |
5444855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 548
Target Start/End: Complemental strand, 5445069 - 5445016
Alignment:
| Q |
495 |
tagtgaacccagaatgtgaatctgactgatcaaaaagtagtatttataggcata |
548 |
Q |
| |
|
||||||||| ||||| || |||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
5445069 |
tagtgaaccgagaatatggatctgattgatcaaaaggtagtttttataggcata |
5445016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University