View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2624R-Insertion-12 (Length: 760)
Name: NF2624R-Insertion-12
Description: NF2624R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624R-Insertion-12 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 730; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 7 - 760
Target Start/End: Complemental strand, 34748698 - 34747945
Alignment:
| Q |
7 |
caaaatattggccaattttgattgagcataagcacgtgttccattatagctgcaaaaaccattgagtatttaaatttagtgtaattgaaattgttcatac |
106 |
Q |
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| T |
34748698 |
caaaatattggccaattttgattgagcataagcacgtgttccattatagctgcaaaaaccattgagtatttaaatttagtgtaattgaaattgttcatac |
34748599 |
T |
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| Q |
107 |
ttttacaaataagaaagtacttgtacttttttccattgagtatatctttgaaacaaaaaccatgtctcttcacccagctatgtatgacggaagaaacgtt |
206 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34748598 |
tttaacaaataagaaagtacttgtacttttttccattgagtatatctttgaaacaaaaaccatgtctcttcacccagctatgtatgacagaagaaacgtt |
34748499 |
T |
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| Q |
207 |
tattattcttccttgaatatctgtcttcttggacgtttctatcattttgtccaataacatttctgttagcaaaaaatgacctgcaattcagtaaaatatc |
306 |
Q |
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| T |
34748498 |
tattattcttccttgaatatctgtcttcttggacgtttctatcattttgtccaataacatttctgttagcaaaaaatgtcctgcaattcactaaaatatc |
34748399 |
T |
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| Q |
307 |
aacactttcattatgtaccattatgataccaaatatgcattaagaattaagaattagaaatgtacctaagtaatttgtggcaaatgtcatctcaattttc |
406 |
Q |
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| T |
34748398 |
aacactttcattatgtaccattatgataccaaatatgcattaagaattaagaattagaaatgtacctaagtaatttgtggcaaatgtcatctcaattttc |
34748299 |
T |
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| Q |
407 |
tcagcagagaactccaaatcttgagagaatacaccagcattgtttctgtaaaatttatttattctaaccattagtgtacatatcataaaatatcattact |
506 |
Q |
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| T |
34748298 |
tcagcagagaactccaaatcttgagagaatacaccagcattgtttctgtaaaatttatttattctaaccattagtgtacatatcataaaatatcattact |
34748199 |
T |
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| Q |
507 |
ttttcccattttctttcactatgttaattattataaaatgaaaaggtggagcaatatgatgacaaaacttacattagaatattaagtggaagatctaaag |
606 |
Q |
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| T |
34748198 |
tttacccattttctttcactatgttaattattataaaatgaaaaggtggagcaatatgatgacaaaacttacattagaatattaagtggaagatctaaag |
34748099 |
T |
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| Q |
607 |
ctaaaaaatcagaacaaaatctttgtacagaacaaaaagagctaagatcaatctccaacagaataacctcagcatttggactctctttttgtatactgtc |
706 |
Q |
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| T |
34748098 |
ctaaaaaatcagaacaaaatctttgtacagaacaaaaagagctaagatcaatctccaacagaataacctcagcatttggactctctttttgtatattgtc |
34747999 |
T |
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| Q |
707 |
tctcactttcattgccttcttcaagtcccttgcaccaatcacaattctcactcc |
760 |
Q |
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| T |
34747998 |
tctcactttcattgccttcttcaagtcccttgcaccaatcacaattctcactcc |
34747945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 3e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 537 - 760
Target Start/End: Original strand, 7970679 - 7970900
Alignment:
| Q |
537 |
ttataaaatgaaaaggtggagcaatatgatgacaaaacttacattagaatattaagtggaagatctaaagctaaaaaatcagaacaaaatctttgtacag |
636 |
Q |
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| T |
7970679 |
ttataaaatgaaaaagtagaacaatatgatgacagaacttacattagaatattaagcggaagatctaaagctaaaaaatcagaacaaaatctttatacag |
7970778 |
T |
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| Q |
637 |
aacaaaaagagctaagatcaatctccaacagaataacctcagcatttggactctctttttgtatactgtctctcactttcattgccttcttcaagtccct |
736 |
Q |
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| T |
7970779 |
aagaaaaggagctaagaccaatttccaacagaataacctcagcatttggactctctttttgtatattg--tctcactttcattgccttcttcaagtccct |
7970876 |
T |
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| Q |
737 |
tgcaccaatcacaattctcactcc |
760 |
Q |
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| T |
7970877 |
tgcaccaatcacaattctcactcc |
7970900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 251 - 545
Target Start/End: Original strand, 7970372 - 7970655
Alignment:
| Q |
251 |
ttttgtccaataacatttctgttagcaaaaaat-gacctgcaattcagtaaaatatcaacactttcattatgtaccattatgataccaaatatgcattaa |
349 |
Q |
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| T |
7970372 |
ttttgtccaataacatttctgttagcaaaaaaaagtcctacaattcaataaaatatgaacaa-----------accactatgataccaaatatgcatcaa |
7970460 |
T |
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| Q |
350 |
gaattaagaattagaaatgtacctaagtaatttgtggcaaatgtcatctcaattttctcagcagagaactccaaatcttgagagaatacaccagcattgt |
449 |
Q |
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| T |
7970461 |
gaattaaaaattagaaatgtatccaaataatttgtggcaaatgtcatctcaattttctctgcagaaaactccaaaacttgagagaatataccagcattgt |
7970560 |
T |
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| Q |
450 |
ttctgtaaaatttatttattctaaccattagtgtacatatcataaaatatcattactttttcccattttctttcactatgttaattattataaaat |
545 |
Q |
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| T |
7970561 |
ttctgtaaaatttatttattctaaccattagtgtccctatcattaaatatcattactttttcccattttatttcactatgct-attattataaaat |
7970655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 573 - 760
Target Start/End: Complemental strand, 43689644 - 43689457
Alignment:
| Q |
573 |
acttacattagaatattaagtggaagatctaaagctaaaaaatcagaacaaaatctttgtacagaacaaaaagagctaagatcaatctccaacagaataa |
672 |
Q |
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| T |
43689644 |
acttacatgagaatattaaggggcaattctaaagctaaaaactctgaacaaaatctttgtacagaagcaagagagctaagatcaatctccaatagaataa |
43689545 |
T |
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| Q |
673 |
cctcagcatttggactctctttttgtatactgtctctcactttcattgccttcttcaagtcccttgcaccaatcacaattctcactcc |
760 |
Q |
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| T |
43689544 |
cctcagcataaggactctcctcttggattttttctttcactttcatagcctttttcatgtctctggcaccaaccacaactcttactcc |
43689457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 128 - 294
Target Start/End: Complemental strand, 43691474 - 43691308
Alignment:
| Q |
128 |
tgtacttttttccattgagtatatctttgaaacaaaaaccatgtctcttcacccagctatgtatgacggaagaaacgtttattattcttccttgaatatc |
227 |
Q |
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| T |
43691474 |
tgtacttttttccagtgagcatgtctttaaaacaaaagcaacttcttttcacccagctatgaattactgaagaaatatttattattcttccttgaatgcc |
43691375 |
T |
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| Q |
228 |
tgtcttcttggacgtttctatcattttgtccaataacatttctgttagcaaaaaatgacctgcaatt |
294 |
Q |
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| T |
43691374 |
tattttatttgcagtatctatcattttctccagtagcatttttgttaacaaaaaatgtcctgcaatt |
43691308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 43690036 - 43689982
Alignment:
| Q |
354 |
taagaattagaaatgtacctaagtaatttgtggcaaatgtcatctcaattttctc |
408 |
Q |
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| T |
43690036 |
taagaatgaaaaaagtacctaagtaatttgtagcaaatgtcaattcaattttctc |
43689982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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