View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2624R-Insertion-5 (Length: 416)
Name: NF2624R-Insertion-5
Description: NF2624R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624R-Insertion-5 |
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| [»] chr1 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0301 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Complemental strand, 38739551 - 38739144
Alignment:
| Q |
8 |
aatatatactccaaagtaaccatcctttcatatatcacatttgtctctcgatttgatcttttgctgtctattccttattgtcatgtattgcctctttata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38739551 |
aatatatactccaaagtaaccatcctttcatatatcacatttgtctctcgatttgatcttttgctgtctattccttattgtcatgtattgcctctttata |
38739452 |
T |
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| Q |
108 |
ttcaactttccttttttgtaactatattcaactctcacaccaatctaaatatgtatactacaatattggactagagaagtgctatatcgcacgataaact |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38739451 |
ttcaactttccttttttgtaactatattcagctctcacaccaatctaaatatgtatactacaatattggactagagaagtgctatatcgcacgataaact |
38739352 |
T |
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| Q |
208 |
tgtcgtgcaaattcaacgaaaatacttgtaaattttttatcctacaaactcttgtgannnnnnnnngtcctactcatcccacttgtaaattttttaaata |
307 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38739351 |
tatcgcgcaaattcaacgaaaatacttgtaaattttttatcctacaaactcttgtga-ttttttttgtcctactcatcccacttgtaaattttttaaata |
38739253 |
T |
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| Q |
308 |
acagaaaagttaaatataaccgcttgggaattttcttttctttttgacggtggaatttcttcatctaattgatcataataaggacccttcattctattcc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38739252 |
acagaaaagttaaatataaccgcttgggaattttcttatctttttgacggtggaatttcttcatctaattgatcataataaggacccttcattctattcc |
38739153 |
T |
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| Q |
408 |
ttttcttct |
416 |
Q |
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||||||||| |
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| T |
38739152 |
ttttcttct |
38739144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 181 - 416
Target Start/End: Complemental strand, 38151918 - 38151685
Alignment:
| Q |
181 |
gagaagtgctatatcgcacgataaacttgtcgtgcaaattcaacgaaaatacttgtaaattttttatcctacaaactcttgtgannnnnnnnngtcctac |
280 |
Q |
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| T |
38151918 |
gagaagtgctatatcgcacgataaacttgtcgcgcaaattcaacgaaaatacttgtaaattttttatcctacaaactcttgtgatttatttt-gtcctac |
38151820 |
T |
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| Q |
281 |
tcatcccacttgtaaattttttaaataacagaaaagttaaatataaccgcttgggaattttcttttctttttgacggtggaatttcttcatctaattgat |
380 |
Q |
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| T |
38151819 |
tcatcccacttgtaaattttttaaataacagaaaagttaa-tataaccgcttgggaattttcttttctttttgacggtggaatttcttcatctaattgat |
38151721 |
T |
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| Q |
381 |
cataataaggacccttcattctattccttttcttct |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
38151720 |
cataataaggacccttcattctattcattttcttct |
38151685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 38744186 - 38744120
Alignment:
| Q |
42 |
tcacatttgtctctcgatttgatcttttgctgtctattccttattgtcatgtattgcctctttatat |
108 |
Q |
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||||||||||||||| |||| ||||||||||||| |||||||||||| | |||||||||||||||| |
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| T |
38744186 |
tcacatttgtctctcaattttatcttttgctgtcagttccttattgtcctctattgcctctttatat |
38744120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 181 - 416
Target Start/End: Complemental strand, 29059701 - 29059467
Alignment:
| Q |
181 |
gagaagtgctatatcgcacgataaacttgtcgtgcaaattcaacgaaaatacttgtaaattttttatcctacaaactcttgtgannnnnnnnngtcctac |
280 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||| |
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| T |
29059701 |
gagaagtgctatatcgcacgataaacttgtcgcgcaaattcaacgaaaatacttgtaatttttttatcctacgagctcttgtgatttttttt-gtcctac |
29059603 |
T |
|
| Q |
281 |
tcatcccacttgtaaattttttaaataacagaaaagttaaatataaccgcttgggaattttcttttctttttgacggtggaatttcttcatctaattgat |
380 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059602 |
tcttcccacttgtaaattttttaaataacagaaaagttaaatataaccgcttgagaattttcttttctttttgacggtggaatttcttcatctaattgat |
29059503 |
T |
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| Q |
381 |
cataataaggacccttcattctattccttttcttct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29059502 |
cataataaggacccttcattctattccttttcttct |
29059467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 181 - 416
Target Start/End: Complemental strand, 8851 - 8617
Alignment:
| Q |
181 |
gagaagtgctatatcgcacgataaacttgtcgtgcaaattcaacgaaaatacttgtaaattttttatcctacaaactcttgtgannnnnnnnngtcctac |
280 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
8851 |
gagaaatgctatatcgcacgataaacttgtcgcgcaaattcaacgaaaatacttgtaaattttttatcctacgagctcttgtgatttttttt-gtcctac |
8753 |
T |
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| Q |
281 |
tcatcccacttgtaaattttttaaataacagaaaagttaaatataaccgcttgggaattttcttttctttttgacggtggaatttcttcatctaattgat |
380 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8752 |
tcttcccacttgtaaattttttaaataacagaaaagttaaatataaccgcttgagaattttcttttctttttgacggtggaatttcttcatctagttgat |
8653 |
T |
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| Q |
381 |
cataataaggacccttcattctattccttttcttct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8652 |
cataataaggacccttcattctattccttttcttct |
8617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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