View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2624R-Insertion-7 (Length: 460)
Name: NF2624R-Insertion-7
Description: NF2624R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624R-Insertion-7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 27 - 459
Target Start/End: Original strand, 31620932 - 31621370
Alignment:
| Q |
27 |
gttaccgaaaccggaatctcaacaataatattcggagtacatgggagtaagaacgaacgagaattcgaaaaggtgtacacaacttcaatattacctccac |
126 |
Q |
| |
|
|||||||||| |||||| ||| ||||| | || || | |||| |||| ||| |||||||| || ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
31620932 |
gttaccgaaattggaatcgcaataataacactcagattgcatgtgagtgagagcgaacgaggatccgaaagggtgtacacaacttcaatattacctccgc |
31621031 |
T |
|
| Q |
127 |
aggagggattataaacctcgcccat---agttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgct |
223 |
Q |
| |
|
|| || | |||||||| | || ||||||||||||||| ||||||||||||| ||||||| |||||| || || | |||||||||| |||||||| |
|
|
| T |
31621032 |
agttggcactataaaccacattcaatacagttgtatcacaattgtataacagatttagttgagaagaaacactaccataaggttgaaactggtcagcgct |
31621131 |
T |
|
| Q |
224 |
ctcaaatgtgctgttattaggcttgtcactcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgtttta |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31621132 |
ctcaaatgtgctgttattaggcttgtcactcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttgta |
31621231 |
T |
|
| Q |
324 |
ttgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---accac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31621232 |
ttgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccac |
31621331 |
T |
|
| Q |
421 |
aactctcttctctgtttcctccccagaatggatacttga |
459 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
31621332 |
aacgctcttctctgttatttccccagaatggatacttga |
31621370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 27 - 459
Target Start/End: Original strand, 31635927 - 31636365
Alignment:
| Q |
27 |
gttaccgaaaccggaatctcaacaataatattcggagtacatgggagtaagaacgaacgagaattcgaaaaggtgtacacaacttcaatattacctccac |
126 |
Q |
| |
|
|||||||||| |||||| ||| ||||| | || || | |||| |||| ||| |||||||| || ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
31635927 |
gttaccgaaattggaatcgcaataataacactcagattgcatgtgagtgagagcgaacgaggatccgaaagggtgtacacaacttcaatattacctccgc |
31636026 |
T |
|
| Q |
127 |
aggagggattataaacctcgcccat---agttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgct |
223 |
Q |
| |
|
|| || | |||||||| | || ||||||||||||||| ||||||||||||| ||||||| |||||| || || | |||||||||| |||||||| |
|
|
| T |
31636027 |
agttggcactataaaccacattcaatacagttgtatcacaattgtataacagatttagttgagaagaaacactaccataaggttgaaactggtcagcgct |
31636126 |
T |
|
| Q |
224 |
ctcaaatgtgctgttattaggcttgtcactcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgtttta |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31636127 |
ctcaaatgtgctgttattaggcttgtcactcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttgta |
31636226 |
T |
|
| Q |
324 |
ttgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---accac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31636227 |
ttgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccac |
31636326 |
T |
|
| Q |
421 |
aactctcttctctgtttcctccccagaatggatacttga |
459 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
31636327 |
aacgctcttctctgttatttccccagaatggatacttga |
31636365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 413
Target Start/End: Original strand, 31616180 - 31616575
Alignment:
| Q |
12 |
atttgtgcagcttgggttaccgaaaccggaatctcaacaataatattcggagtacatgggagtaagaacgaacgagaattcgaaaaggtgtacacaactt |
111 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||| | | ||||||||| |||| | | ||||||| || ||| | |||||||||||||| |
|
|
| T |
31616180 |
atttgtgcagcttgagttaccgaaattggaatctcaacaataacacttggagtacatcagagtgatactgaacgaggatccgagatggtgtacacaactt |
31616279 |
T |
|
| Q |
112 |
caatattacctccacaggagggattataaacctcgccc---atagttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttg |
208 |
Q |
| |
|
|||||||||||| |||| | | || ||||| | | ||| ||||||||||||| |||||||| |||||||||||| ||||| ||| ||||||||| |
|
|
| T |
31616280 |
caatattacctctgcaggtagtactaaaaaccacattcggtatacttgtatcacaattgtataacaggtttacttgagaagaaacaacaccatcacgttg |
31616379 |
T |
|
| Q |
209 |
aaactgatcagcgctctcaaatgtgctgttattaggcttgtcactcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtg |
308 |
Q |
| |
|
|||| || || ||| ||||| || ||||| || || || || |||||||| | |||| ||||||||||| ||||||||||||||| |||| ||| |
|
|
| T |
31616380 |
aaac--at-agtgctatcaaaagttctgttcttgggatt-----tc-cactcacattgacagcacaaataccactccagtaatcgtctctggcgatcgtg |
31616470 |
T |
|
| Q |
309 |
agtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggat |
408 |
Q |
| |
|
||||||||| || ||| | ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31616471 |
agtttctgtattatatcattccaatcatgaatacggtatttggcgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggat |
31616570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 257 - 460
Target Start/End: Original strand, 31606494 - 31606703
Alignment:
| Q |
257 |
actcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtca |
356 |
Q |
| |
|
||||||| |||||| ||||||||||| |||| |||| ||||| |||||||||||||| ||| || ||| || ||| |||||||| |||||||||||||| |
|
|
| T |
31606494 |
actcacattcacagcacaaataccactccagcaatcttctctggcgactgtgagtttttgtattgtatcgttccaatcaagaatgcggtatttgacgtcg |
31606593 |
T |
|
| Q |
357 |
ttgatggttatctttggaacactttcttcgcatgtaagctccatattaggatc---agaaacaccacaactctct---tctctgtttcctccccagaatg |
450 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | | ||||| ||| |||||||||||| |
|
|
| T |
31606594 |
ttgatatttatctttggaacactttcttcgcatgtaagatccatattaggatcggaagaaacaccaccacaatatttatctctattttctccccagaatg |
31606693 |
T |
|
| Q |
451 |
gatacttgat |
460 |
Q |
| |
|
|||||||||| |
|
|
| T |
31606694 |
gatacttgat |
31606703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 267 - 459
Target Start/End: Original strand, 31610334 - 31610529
Alignment:
| Q |
267 |
acagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggtta |
366 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| || ||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||| || |||| |
|
|
| T |
31610334 |
acagcacaaataccactccagtaatcgtctctggcaactctgagtctctgtgttgtattgtcccattcaagaatacggtatttgaccaaattaattgtta |
31610433 |
T |
|
| Q |
367 |
tctttggaacactttcttcgcatgtaagctccatattaggat---cagaaacaccacaactctcttctctgtttcctccccagaatggatacttga |
459 |
Q |
| |
|
|||| || |||||| |||||||| |||||||| ||||||| |||||||||||||| || ||||||||||||||||||| | |||||||||| |
|
|
| T |
31610434 |
tcttagggacacttccttcgcatacgagctccatcttaggatcaccagaaacaccacaatacttttctctgtttcctccccagtacggatacttga |
31610529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 454
Target Start/End: Original strand, 31597326 - 31597496
Alignment:
| Q |
284 |
ccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttct |
383 |
Q |
| |
|
||||||||| ||||| || ||| | ||| || ||||| ||||| ||||||||||||||| ||||| ||| |||||| |||||||| || || || || |
|
|
| T |
31597326 |
ccagtaatcatctcttgcaactctaagtctcagtgttgcattgttccattcaagaatacgatatttcacgaaattgatcgttatcttcgggacttttcct |
31597425 |
T |
|
| Q |
384 |
tcgcatgtaagctccatattaggatcagaaacaccacaactctcttctctgtttcctccccagaatggata |
454 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||| | | |||| ||| |||||||||||||||| |
|
|
| T |
31597426 |
tcgcatgtaagcttcatattaggatcggaaacaccacaataatttcctctattttctccccagaatggata |
31597496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University