View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2624_high_1 (Length: 529)
Name: NF2624_high_1
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 4328355 - 4327854
Alignment:
| Q |
1 |
agtaacacagaacatgtcggggacatgaatttgctagtggaaatttaggcagcccatgcaaggtttgagcagaaaccaagatctaagagattcaaattga |
100 |
Q |
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| T |
4328355 |
agtaacacagaacatgtcggggacatgaatttgctagtggaaattttggcagcccatgcaaggtttgagcagaaaccaagatctaagagactcaaattga |
4328256 |
T |
|
| Q |
101 |
ctacgacgaataaaacacgatccaaaccaaaacccatatctatcaaacaaccagagaaattcccagggtttgctacctcaagaggggtttagaggtggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4328255 |
ctacgacgaataaaacacgatccaaaccaaaacccatatctatcaaacaaccagagaaattcccagggtttgctacctcaagaggggtttagaggtggtg |
4328156 |
T |
|
| Q |
201 |
tcgttgtgaaggattgtgagcatcaccaccatcaatgctacatcgtgttgggactatggataagggaggtacggggatagaggcgacgaagggttgtcga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
4328155 |
tcgttgtgaaggattgtgagcatcaccaccatcaatgctacatcgtgttgggactatggataagggaggtagggggacagaggcgacgaagggttgtcga |
4328056 |
T |
|
| Q |
301 |
ttcttatgaatttagggttgtgggttcttgtgtatctagttacaatattnnnnnnnntcagttaaaagtgaattcaagagccacaaaaacaataggttat |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4328055 |
ttcttatga----------gtgggttcttgtgtatctagttacaatattaaaaaaaatcagttaaaagtgaattcaagagccacaaaaacaataggttat |
4327966 |
T |
|
| Q |
401 |
attattttgatctatttttagtttgccaaacaaaattaaataatgaatataagtagtttttaaaaaatagtcggaatcaaatacctgcagttttggagga |
500 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4327965 |
attattttgatctatttttagtttaccaaacaaaattaaataatgaatataagtagtttttaagaaatagtcggaatcaaatacctgcagttttggagga |
4327866 |
T |
|
| Q |
501 |
aattgtagaatt |
512 |
Q |
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| T |
4327865 |
aattgtagaatt |
4327854 |
T |
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