View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2624_high_3 (Length: 393)
Name: NF2624_high_3
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 28243064 - 28243445
Alignment:
| Q |
1 |
atacacggtctttcccttcttctttcttttgttccaattaagcaatatcacttccttcaagtaatttaacctttgttcctgaaaaggtcaatcattagga |
100 |
Q |
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| T |
28243064 |
atacacggtctttaccttcttctttcttttgttccaattaagcaatatcacttccttcaagtaatttaacctttgttcctgaaaaggtcaatcattagga |
28243163 |
T |
|
| Q |
101 |
ataccaggatctttctcaaccttcttcttattacttaattttgaaagggtgcgctacatcatgataaaaacaaacgcagatcttgtcaatgacgagcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
28243164 |
ataccaggatctttctcaaccttcttcttattacttaattttgaaagggtgcgctacatcatgataaaaacaaacgcagatcttatcaatgacgagccaa |
28243263 |
T |
|
| Q |
201 |
tattttttctaggcactctattatatatgttttctccaaatcaatgaaaattaagtgcaattgctttttatctgttgatatatctcttgcacatgttgta |
300 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28243264 |
tattttttctaggcactctat--tatatgttttctacaaatcaatgaaaattaagtgcaattgctttttatctgttgatatatctcttgcacacattgta |
28243361 |
T |
|
| Q |
301 |
gtaaatagatttcttccatggtcgactt-ccgacataaaattaaattgattattaataacttgagtctcttttcttaatctctg |
383 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28243362 |
gtaaatagatttcttccatggtcgacttcccaacataaaattaaattgattattagtaacttgagtctcttttcttaatctctg |
28243445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 18178262 - 18178328
Alignment:
| Q |
74 |
tgttcctgaaaaggtcaatcattaggaataccaggatctttctcaaccttcttcttattacttaatt |
140 |
Q |
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| T |
18178262 |
tgttccttaaaaggccaatcatttggaataccaggatctttctcaaccttcttcttaccacttaatt |
18178328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 20369077 - 20369011
Alignment:
| Q |
74 |
tgttcctgaaaaggtcaatcattaggaataccaggatctttctcaaccttcttcttattacttaatt |
140 |
Q |
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| T |
20369077 |
tgttccttgaaaggccaatcatttggaatgccaggatctttctcaaccttcctcttaccacttaatt |
20369011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 36870379 - 36870407
Alignment:
| Q |
232 |
ttctccaaatcaatgaaaattaagtgcaa |
260 |
Q |
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| T |
36870379 |
ttctccaaatcaatgaaaattaagtgcaa |
36870407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 6464995 - 6464948
Alignment:
| Q |
225 |
atatgttttctccaaatcaatgaaaattaagtgcaattgctttttatc |
272 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||| |||||||| |
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| T |
6464995 |
atatgtcttatccaaatcaatgaaaattaagtgcaatttttttttatc |
6464948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 52798610 - 52798557
Alignment:
| Q |
332 |
acataaaattaaattgattattaataacttgagtctcttttcttaatctctgct |
385 |
Q |
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||||||||| |||||| || | |||||||||||||| |||||||| |||||||| |
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| T |
52798610 |
acataaaatcaaattggttttcaataacttgagtctattttcttagtctctgct |
52798557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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