View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2624_high_4 (Length: 304)
Name: NF2624_high_4
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 43894511 - 43894311
Alignment:
| Q |
1 |
agacaaggaaaaatggtggcatgttaactcgtattcccaaatcaagttagagactggaacgagttggggctcgaattagttacaacaaaccaaaccataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||| |
|
|
| T |
43894511 |
agacaaggaaaaatggtggcatgttaactcgtattcccaaatcaagttagagactgttacgagttagggctcgaactagtttcaacaaaccaaaccataa |
43894412 |
T |
|
| Q |
101 |
tgacacagaagcaacaacaactaaggtcgaattcactgttacaaaccaacaaattaaagataccaatgaagagcaaccccaaattagaatagtgtcgaac |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43894411 |
tgacacagaagcaacaacaactaagatcgaattcactgttacaaaccaacaaattaaagattccaatgaagagcaaccccaaattagaatagtgtcgaac |
43894312 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
43894311 |
a |
43894311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 43893545 - 43893458
Alignment:
| Q |
201 |
aaaactctttagttataactttttaattctatcaattataattaatagtataattattgttttgcagtggacagtgttaacatggaca |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43893545 |
aaaactctttagttataactttttaattctatcaattataattaatagtataattattgttttgcagtggacagtgttaacatggaca |
43893458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 43904126 - 43904050
Alignment:
| Q |
213 |
ttataactttttaattctatcaattataattaatagtataattattg-ttttgcagtggacagtgttaacatggaca |
288 |
Q |
| |
|
|||||| |||||||||||||| ||| | ||| || ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
43904126 |
ttataattttttaattctatcgattctcatttattgtataattatttattttgcagtggacaatgttaacatggaca |
43904050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University