View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2624_high_7 (Length: 237)
Name: NF2624_high_7
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 28132442 - 28132649
Alignment:
| Q |
19 |
caaatcactttggcatacaagttaaaagtgaagcaaa-ttgaaagtaa----actaccatcccaaagcacatcatattggaatgtattaacaagccaatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28132442 |
caaatcactttggcatacaagttaaaagtgaagcaaaattgaaagtaagtaaactaccatcccaaagcacatcatattggaatgtattaacaaaccaatt |
28132541 |
T |
|
| Q |
114 |
tgttcatgaactacaatcactnnnnnnncctaattatagcccaaaacactacaaacaactaacaagaatactcgagaacaaataatgaaaaatcaaaagt |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28132542 |
tgttcatgaactacaatcactataaaaacctaattatagcccaaaacactacaaacaactaacaagaatactcaagaacaaataatgaaaaatcaaaagt |
28132641 |
T |
|
| Q |
214 |
ctaatact |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
28132642 |
ctaatact |
28132649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University