View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2624_low_4 (Length: 321)
Name: NF2624_low_4
Description: NF2624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2624_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 47 - 303
Target Start/End: Complemental strand, 45592748 - 45592492
Alignment:
| Q |
47 |
agtttagcttatctacttaacaactcaattttcaaccgtaacatagtattctaaatcaagtggatggtaatgtatgtaacacatcaaacttcacaaccgc |
146 |
Q |
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| T |
45592748 |
agtttagcttatctacttaacaactcaattttcaaccgtaatatagtattctaaatcaagtggatggtaatgtatgtaacacatcaaacttcacaaccgc |
45592649 |
T |
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| Q |
147 |
taaaccaagcaattgagttaaatgattaacgaacttcatcaaaaatgaataatttaaaataacctaaatttgaatggtgcaacaattcttaggcattatt |
246 |
Q |
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| T |
45592648 |
taaaccaagcaattgagttaaatgattaacaaacttcatcaaaaatgaatagtttaaaataacctaaatttgaatggtgaaacaattcttaggcattatt |
45592549 |
T |
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| Q |
247 |
tatttatttcatggtagaactctaaattgtcaagacctatttctctagggttaacat |
303 |
Q |
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| T |
45592548 |
tatttatttcatggtagaactctaaattgtcaagacctatttctctagggttaacat |
45592492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 45592808 - 45592760
Alignment:
| Q |
16 |
ataataaattcaagaatatgtacctagtttgagtttagcttatctactt |
64 |
Q |
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| T |
45592808 |
ataataagttcaagaatatgtaccttgtttgagtttagcttatctactt |
45592760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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