View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2625_high_1 (Length: 451)
Name: NF2625_high_1
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 1800975 - 1800742
Alignment:
| Q |
11 |
atattctacattttgatgttaacagtgggattaaccaaggtgggttaaagaagataaaaaataaagaggtttgatagttcatctgatttgagttgagcaa |
110 |
Q |
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| T |
1800975 |
atattctacattttgatgttaacagtgggattaaccaaggtgggttaaagaagataaaaaataaagaggtttgatagttcatctgatttgagttgagcaa |
1800876 |
T |
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| Q |
111 |
taacaaaacagaacgaaatattaaatataatctaacaaaatgtgtacaccaaatgataacccattttgacattttctcttgacatcgttagcaccaaatg |
210 |
Q |
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| T |
1800875 |
taacaaaacagaacgaaatattaaatataatctaacaaaatgtgtacaccaagtgataacccattttgacattttctcttgacatcgttagcaccaaatg |
1800776 |
T |
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| Q |
211 |
tgtacaccaagttagcttaacatgccatgttaca |
244 |
Q |
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| T |
1800775 |
tgtacaccaagttagcttaacatgccatgttaca |
1800742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 308 - 433
Target Start/End: Complemental strand, 1800678 - 1800553
Alignment:
| Q |
308 |
gatggtaacatgtacaggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttac |
407 |
Q |
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| T |
1800678 |
gatggtaacatgtacaggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttac |
1800579 |
T |
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| Q |
408 |
caaacataggaatggaagggtgccta |
433 |
Q |
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| T |
1800578 |
caaacataggaatggaagggtgccta |
1800553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 308 - 428
Target Start/End: Complemental strand, 1776472 - 1776352
Alignment:
| Q |
308 |
gatggtaacatgtacaggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttac |
407 |
Q |
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| T |
1776472 |
gatggtaacatgcgcaggatttgacacttggatcatcgttggtgaggccacatcctatctttaatgatgaaaaactgatattgaaagaaacaagagttac |
1776373 |
T |
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| Q |
408 |
caaacataggaatggaagggt |
428 |
Q |
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| T |
1776372 |
caagctgaggaatggaagggt |
1776352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 1782893 - 1782778
Alignment:
| Q |
313 |
taacatgtacaggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttaccaaac |
412 |
Q |
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| T |
1782893 |
taacatgcgcaggatttaacacttggatcatcattggtgaggccacatcctatctttaacgacataaaactagtgttgaaagaaacaagagttaccaagc |
1782794 |
T |
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| Q |
413 |
ataggaatggaagggt |
428 |
Q |
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| T |
1782793 |
agaggaatggaagggt |
1782778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 322 - 433
Target Start/End: Original strand, 25729816 - 25729927
Alignment:
| Q |
322 |
caggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttaccaaacataggaatg |
421 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||| |
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| T |
25729816 |
caggatttgacacttggattatcgttagtgaggccacatcctaactttaatgacgaaaaactattattgaaagaaacaagagttaccaagcataggtatg |
25729915 |
T |
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| Q |
422 |
gaagggtgccta |
433 |
Q |
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| T |
25729916 |
gaagggtgccta |
25729927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 25729670 - 25729734
Alignment:
| Q |
173 |
attttgacattttctcttgacatcgttagcaccaaatgtgtacaccaagttagcttaacatgccat |
238 |
Q |
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| T |
25729670 |
attttgatattttctcttgagaccactagcaccaaatgtgtac-ccaagttaccttaacataccat |
25729734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 21124590 - 21124655
Alignment:
| Q |
346 |
ttggtgaggccacatcctatctttaatg-acaaaaaactattgttgaaagaaacaagagttaccaa |
410 |
Q |
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| T |
21124590 |
ttggtgaggccacatcctatctttaatgaatataaaactattgttgaacgaaacaagagttaccaa |
21124655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 1673038 - 1672976
Alignment:
| Q |
349 |
gtgaggccacatcctatctttaatgacaa-aaaactattgttgaaagaaacaagagttaccaa |
410 |
Q |
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| T |
1673038 |
gtgaggccacatcctatctttaatgaatacaaaactattgttgaacgaaacaagagttaccaa |
1672976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 425
Target Start/End: Complemental strand, 32315722 - 32315664
Alignment:
| Q |
367 |
tttaatgacaaaaaactattgttgaaagaaacaagagttaccaaacataggaatggaag |
425 |
Q |
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||||||||| ||||||||| ||||| ||||||||||||||||| || ||| ||||||| |
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| T |
32315722 |
tttaatgacgaaaaactatcattgaacgaaacaagagttaccaagcagagggatggaag |
32315664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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