View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2625_high_12 (Length: 227)
Name: NF2625_high_12
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_high_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 3435053 - 3435281
Alignment:
| Q |
6 |
ataatgaggataagatttaggttaatagaagagtaggaactcttgaggaaggtttgtgtaatttcttcctaagtaatacaatgggatggctcctattatt |
105 |
Q |
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| T |
3435053 |
ataatgaggataagatttaggttaatagaagagtaggaactcttgaggaaggtttgtgtaatttcttcctaagtaatacaatgggatggctcctattatt |
3435152 |
T |
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| Q |
106 |
tatacaatttgcattcaatcatttttctacgtcatatagagtgnnnnnnncttctttctaatgcttctctctctcatgggcttaggaa-------tcata |
198 |
Q |
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| T |
3435153 |
tatacaatttgcattcaatcatttttctacgtcatatagagtatttttttcttctttctaattcttctctctctcatgggcttaggaatcatatttcata |
3435252 |
T |
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| Q |
199 |
gggggtatggtgaatgcttgtaattggtc |
227 |
Q |
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| T |
3435253 |
gggggtatggtgaatgcttataattggtc |
3435281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 3376068 - 3376117
Alignment:
| Q |
42 |
gaactcttgaggaaggtttgtgtaatttcttcctaagtaatacaatggga |
91 |
Q |
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| T |
3376068 |
gaacacttgagcaaggtttgtgtaatttcttccaaagtaatacaatggga |
3376117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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