View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2625_high_13 (Length: 224)
Name: NF2625_high_13
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 4284248 - 4284120
Alignment:
| Q |
86 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacggaaatcactgccgatctccctgttaaccaccgtcactctc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4284248 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacagaaatcactgccgatctccccgttaaccaccgtcactctc |
4284149 |
T |
|
| Q |
186 |
tctattcctccggccacgtttgtttcatc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4284148 |
tctattcctccggccacgtttgtttcatc |
4284120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 8682321 - 8682280
Alignment:
| Q |
86 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8682321 |
aaatccaaaatcaatttccatctcaaaaccctaaaccaccaa |
8682280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 6348737 - 6348776
Alignment:
| Q |
86 |
aaatccaaaatcaatttccatctcaaaaccctaaaccccc |
125 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
6348737 |
aaatacaaaatcaatttgcatctcaaaaccctaaaccccc |
6348776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 25978334 - 25978378
Alignment:
| Q |
170 |
aaccaccgtcactctctctattcctccggccacgtttgtttcatc |
214 |
Q |
| |
|
||||||| || |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
25978334 |
aaccaccatcgctctctatattcctccggccacatttgtttcatc |
25978378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University