View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2625_high_3 (Length: 387)
Name: NF2625_high_3
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 41159686 - 41160065
Alignment:
| Q |
8 |
gacatcatcagcattccgacttggcaatgatccagaagagtgaaacgatggaagtgttgaattctgaaataagttgagctcatcaatgtcttcttcaaca |
107 |
Q |
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| T |
41159686 |
gacatcagcagcattccgaattggcaatgatccagaagagtgaaacgatggatgtgttgaattctgaaataagttgagctcatcaatgtcttcttcaaca |
41159785 |
T |
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| Q |
108 |
gaaaaaggtggaatttttatagaactcaaaggaggtggatttttccaagtaggaagtggcccggaaagaacaagattttgaagcaatggaccagcattaa |
207 |
Q |
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| T |
41159786 |
gaaaaaggtggaatttttatagaactcaaaggaggtggatttttccaagtaggaagtggcccggaaagaacaagattttgaagcaatggaccagcattaa |
41159885 |
T |
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| Q |
208 |
ttacagcatcaagaagtttacctttttgtggtaacacttttcctcttgcaagagaatcaaccaccctacttgcaacatcaacctcgtcatgaaccaaagt |
307 |
Q |
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| T |
41159886 |
ttacagcatcaagaagtttacctttttgtggtaacacttttcctcttgcaagagaatcaaccaccctacttgcaacatcaacctcgtcatgaaccaaagt |
41159985 |
T |
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| Q |
308 |
ttggttgaaaaaatatttgttatgtgaatcaacaccaacatttgaaaattcaggagaagagacagcttcaataaaggaat |
387 |
Q |
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| T |
41159986 |
ttggttgaaaaaatatttgttatgtgaatcaacaccaacatttgaaaattcaggagaagagacagcttcaataaaggaat |
41160065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 23323804 - 23323936
Alignment:
| Q |
133 |
tcaaaggaggtggatttttccaagtaggaagtggcccggaaagaacaagattttgaagcaatggaccagcattaattacagcatcaagaagtttaccttt |
232 |
Q |
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| T |
23323804 |
tcaaaggaggtggattgctccaagtaggaagtggtccagcaagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttaccctt |
23323903 |
T |
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| Q |
233 |
ttgtggtaacacttttcctcttgcaagagaatc |
265 |
Q |
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| T |
23323904 |
ttgaggcaaaactttttctttagcaatagaatc |
23323936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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