View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2625_high_4 (Length: 322)
Name: NF2625_high_4
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_high_4 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0779 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 20075896 - 20076105
Alignment:
| Q |
3 |
aggaggaacacagtagtcctcaattgcttgcaccacaagttacagaagccaagcactagtgaagagttagttagagacaataactaacttccttgaatat |
102 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20075896 |
aggaggaacacagtggtcttcaattgcttgcaccacaagttacagaagccaagcactagtgaagagttagttagagataataactaacttccttgaatat |
20075995 |
T |
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| Q |
103 |
aggaaagttgggcagtcttctagtgtaactagtacatattagtcttacagtgcagtagcaataaccaactataaaaagacaattctgtaactaacttcat |
202 |
Q |
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||||||||| |||||| | ||||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
20075996 |
aggaaagttaggcagtgatgtagtgtagctagtacatgttagtcttatagtgcagtagcaataaccaactat-aaaagacaattctataactaacttca- |
20076093 |
T |
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| Q |
203 |
tttcaatgagaa |
214 |
Q |
| |
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|||||||||||| |
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| T |
20076094 |
tttcaatgagaa |
20076105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 20079020 - 20079231
Alignment:
| Q |
1 |
ataggaggaacacagtagtcctcaattgcttgcaccacaagttacagaagccaagcactagtgaagagttagttagagacaataactaacttccttgaat |
100 |
Q |
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|||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
20079020 |
ataggacgaacacagtggtcttcaattgcttgcaccacaagttacagaagccaagcactagtgaagagttagttagagataataagtaacttccttgaat |
20079119 |
T |
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| Q |
101 |
ataggaaagttgggcagtcttctagtgtaactagtacatattagtcttacagtgcagtagcaataaccaactataaaaagacaattctgtaactaacttc |
200 |
Q |
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| T |
20079120 |
ataggaaagttaggcagtgatgcagtgtagctagtacatgttagtcttatagtgcagtagcaataaccaactat-aaaagacaattctgtaactaacttc |
20079218 |
T |
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| Q |
201 |
attttcaatgagaa |
214 |
Q |
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||||| |||||||| |
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| T |
20079219 |
atttt-aatgagaa |
20079231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 25578031 - 25577985
Alignment:
| Q |
276 |
actcaatatggtatctagagccttttgatttctcttccgcaagcttt |
322 |
Q |
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|||||| |||||||||||||| |||||||| || ||||||||||||| |
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| T |
25578031 |
actcaacatggtatctagagctttttgattccttttccgcaagcttt |
25577985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 2984385 - 2984434
Alignment:
| Q |
273 |
gttactcaatatggtatctagagccttttgatttctcttccgcaagcttt |
322 |
Q |
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|||||| |||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
2984385 |
gttacttaatatggtatctagagccctttgatctctcttccgcaagcttt |
2984434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 1901 - 1947
Alignment:
| Q |
276 |
actcaatatggtatctagagccttttgatttctcttccgcaagcttt |
322 |
Q |
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|||||| |||||||||||||| |||||||| || ||||||||||||| |
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| T |
1901 |
actcaacatggtatctagagctttttgattccttttccgcaagcttt |
1947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 26363662 - 26363616
Alignment:
| Q |
276 |
actcaatatggtatctagagccttttgatttctcttccgcaagcttt |
322 |
Q |
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|||||| |||||||||||||| |||||||| || ||||||||||||| |
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| T |
26363662 |
actcaacatggtatctagagctttttgattccttttccgcaagcttt |
26363616 |
T |
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