View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2625_high_5 (Length: 311)
Name: NF2625_high_5
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_high_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 3435755 - 3435474
Alignment:
| Q |
13 |
atacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatctnnnnnnnnttccattcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
3435755 |
atacgaacataatcaaaccattctctagcaaccgtgcaattatctaccctcaacaatcgaccaaaatcaaaagcacataatctaaaaaatttcccattcc |
3435656 |
T |
|
| Q |
113 |
atgcttgcaaagaaactccataaattcgaatccgtgcacctccttcaaatttttaaaatatatattccaattaaaagatactattccacgcaatagtatc |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||| | | || || ||||||| ||||||||||| |
|
|
| T |
3435655 |
atgcttgcaaagaaactccgtaaattcgaatccgtgaacctctttcaaat--ttaacaca-atctt---------------tattccatgcaatagtatc |
3435574 |
T |
|
| Q |
213 |
tcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagatttcatttaaaatatatattacgaaatcgtt-ttgtaaaaagatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3435573 |
tcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagattccatttaaaatatatattacgaaatcgttgttgtaaaaagatt |
3435474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 17964288 - 17964370
Alignment:
| Q |
13 |
atacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatct |
95 |
Q |
| |
|
|||||| | |||||| ||| ||||||| ||||||||| |||| |||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
17964288 |
atacgagcgtaatcatacctttctctataaaccgtgcaactatccacccgtaacattcgactaaaatcaaaagcacataatct |
17964370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University