View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2625_high_6 (Length: 294)
Name: NF2625_high_6
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 28087129 - 28087405
Alignment:
| Q |
1 |
caacaagagaaaaacaataacttgactttctcaggagtgatttcaatggcctctgaagttgaggaggatattaaatcgaggcctgagatcgaggtagctt |
100 |
Q |
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| T |
28087129 |
caacaagagaaaaacaataacttgaccttctcaggagtgatttcaatggcttctgaagttgaggaggatattaaatcgaggcctgagatcgaggtagctt |
28087228 |
T |
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| Q |
101 |
tcaaagatgtaacccttactttgaaagggaaaagaaaacatatactgaggtgtgtgacaggtaaaatcatgcccggtcgagtttcagctgtgatgggtcc |
200 |
Q |
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| T |
28087229 |
tcaaagatgtaacccttactttgaaagggaaaagaaaacatatactgaggtgtgtgacaggtaaaatcatgcccggtcgagtttcagctgtgatgggtcc |
28087328 |
T |
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| Q |
201 |
ctcgggagctggaaaaactacatttctttctgccctggcagggaaaataagaggatgcactatgacaggctcaattt |
277 |
Q |
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| T |
28087329 |
ctcgggagctggcaaaactacatttctttctgccctggcagggaaaataagaggatgcactatgacaggctcaattt |
28087405 |
T |
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Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 91 - 276
Target Start/End: Complemental strand, 41043207 - 41043022
Alignment:
| Q |
91 |
gaggtagctttcaaagatgtaacccttactttgaaagggaaaagaaaacatatactgaggtgtgtgacaggtaaaatcatgcccggtcgagtttcagctg |
190 |
Q |
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|||||||||||||| || ||||||| || ||||| || |||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |
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| T |
41043207 |
gaggtagctttcaataatctaaccctgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtcgagtttctgctg |
41043108 |
T |
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| Q |
191 |
tgatgggtccctcgggagctggaaaaactacatttctttctgccctggcagggaaaataagaggatgcactatgacaggctcaatt |
276 |
Q |
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| T |
41043107 |
ttatgggaccctcaggagctggaaaaaccacatttctttcagctttggctggaaaagcaagaggatgcactatgtcaggctcaatt |
41043022 |
T |
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