View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2625_high_7 (Length: 292)
Name: NF2625_high_7
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 31295336 - 31295613
Alignment:
| Q |
18 |
taatgatgataagagttcattgaat---tctataattttgcaatgtactcaacttatatcaagcaccattaaaagtcctgacttcttggaattcaaacca |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31295336 |
taatgatgataagagttcattgaataattctataattttgcaatgtactcaacttatatcaagcaccattaaaagtcctgacttcttggaattcaaacca |
31295435 |
T |
|
| Q |
115 |
tcagagattgcagcagcagtggcaacatatgttgttggagaatttcaagcaattgatagtagcaaatcaatttctactctgattcaatacatagaaaagg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31295436 |
tcagagattgcagcagcagtggcaacatatgttgtagaagaatttcaagcaattgatagtagcaaatcaatttctactctgattcaatacatagaaaagg |
31295535 |
T |
|
| Q |
215 |
agagattattgaagtgtgttgaaaaggtgcaagagatgtgtgttttcactgccaaggattcaaatgcctcttctgtct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31295536 |
agagattattgaagtgtgttgaaaaggtgcaagagatgtgtattttcactgccaaggattcaaatgcctcttctgtct |
31295613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 46341613 - 46341492
Alignment:
| Q |
93 |
tgacttcttggaattcaaaccatcagagattgcagcagcagtggcaacatatgttgttggagaatttcaagcaattgatagtagcaaatcaatttctact |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
46341613 |
tgacttcttggaattcaaaccatcagagattgcagcagctgtggcaacatgtgttgttggggaaacccaagcaattgatagtagcaaatcaatttccact |
46341514 |
T |
|
| Q |
193 |
ctgattcaatacatagaaaagg |
214 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
46341513 |
ctgattcaatacgtagaaaagg |
46341492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 46341826 - 46341763
Alignment:
| Q |
20 |
atgatgataagagttcattgaattctataattttgcaatgtactcaacttatatcaagcaccat |
83 |
Q |
| |
|
||||||||||||||||||| | |||| ||||| || || ||||||||||||||||||||||| |
|
|
| T |
46341826 |
atgatgataagagttcattaagttcttcaatttcgcgatcaactcaacttatatcaagcaccat |
46341763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 46341159 - 46341122
Alignment:
| Q |
216 |
gagattattgaagtgtgttgaaaaggtgcaagagatgt |
253 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
46341159 |
gagattattgaagtgtgttggaaaggtccaagagatgt |
46341122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University