View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2625_high_8 (Length: 268)

Name: NF2625_high_8

Description: NF2625

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2625_high_8

[»] chr5 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 164; E-Value: 1e-87

Query Start/End: Original strand, 1 - 202

Target Start/End: Complemental strand, 4284561 - 4284361

Alignment:

Q	1	ttttcgcggttcactggttttacagttgaaacttggaatgcttcattccttcgagaatttgcagttccaaacctaaannnnnnnctcagtaacaatcaaa	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	4284561	ttttcgcggttcactggttttgcagttgaaacttggaatgcttcattccttcgagaatttgcagttcaaaacctaaatttttt-ctcagtaataatcaaa	4284463	T

Q	101	tcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatggc	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4284462	tcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatggc	4284363	T

Q	201	gg	202	Q
		\|\|
T	4284362	gg	4284361	T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 142 - 198

Target Start/End: Complemental strand, 23429478 - 23429422

Alignment:

Q	142	caatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatg	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23429478	caatggttcttcaattccacacaaacataatcacttaacttctagaagacaccaatg	23429422	T

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