View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2625_low_1 (Length: 489)
Name: NF2625_low_1
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 56300662 - 56300237
Alignment:
| Q |
19 |
catctttcatgtcatcgtggcttttattattcataataagtgtcttctataatttttt-gtgggg-tattacttattttttgatagtaacaaaaataaaa |
116 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
56300662 |
catctttcatgtcatcttgtcttttattattcataataagtgtcttttataatttttttgtgggggtattacttattttttgatagtaacaaaaataaaa |
56300563 |
T |
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| Q |
117 |
cgactgaaaatctttaaagaaaacaaataaatagcagagacaattgcctccaaatgagctaaaggtcgatctgtggctggttgtaaccgcttaagacttc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
56300562 |
cgactgaaaatctttaaagaaaacaaataaatagcagagacaattgcctccaaatgagctaaaggtcgatctgtgcctggttgtaaccgcttaagacttc |
56300463 |
T |
|
| Q |
217 |
ttttatcttttgaaagatgagtaaaa-gataacgtaatggatactaataatgatgtaagtaatgtattattttattatggaaaattatttgataaacagt |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56300462 |
ttttatcttttgaaagatgagtaaaaagataacgtaatggatactaataatgatgtaagtaatgtattattttattatggaaaattatttgataaacagt |
56300363 |
T |
|
| Q |
316 |
ggagttggcagcacaagggcggctgatcaggttggatgatttatgggaccatcaatctacttagaaaaatgaggggaatagatcctcttaaattcttttc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56300362 |
ggagttggcagcacaagggcggctgatcaggttggatgatttatgggtccatcaatctacttagaaaaatgaggggaatagatcctcttaaattcttttc |
56300263 |
T |
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| Q |
416 |
tctcatataatatctatctcgagtta |
441 |
Q |
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|||||||||||||||||||||||||| |
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| T |
56300262 |
tctcatataatatctatctcgagtta |
56300237 |
T |
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