View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2625_low_10 (Length: 250)
Name: NF2625_low_10
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 34255534 - 34255296
Alignment:
| Q |
8 |
cgaagaatatacctggtgataacctcctcttttcgtgacctccaagtaaaacaggtacaagtcaagggatgtttttcggacatcatatctgccaaataga |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34255534 |
cgaacaatatacctggtgataacctcctcttttcgtgacctccaagtaaaacaggtacaagtcaagggatgtttttcggacatcatatctgccaaataga |
34255435 |
T |
|
| Q |
108 |
attggaaaaagaggtgcatgatgattcatacattttatatatccataagaaaaattagtttaattagtatacaccgaaagtgtaaggttgttttacacat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34255434 |
attggaaaaagaggtgcatgatgattcatacattttatatatccataagaaaaattagtttaattagtatacaccgaaagtgtaaggttgttttacacat |
34255335 |
T |
|
| Q |
208 |
acattgcacgtccattaatgaatacttcctccggtcaca |
246 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34255334 |
aaattgcacgtccattaatgaatacttcctccggtcaca |
34255296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 41551745 - 41551644
Alignment:
| Q |
13 |
aatatacctggtgataacctcctcttttcgtgacctccaagtaaaacaggtacaagtcaagggatgtttttcggacatcatatctgccaaatagaattgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| || ||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
41551745 |
aatatacctggtgataacctcctcttcttgtgacctccaagtaaaagaggtacaagtctagagatgtttctcggacattgaaactgccaaatagaattgg |
41551646 |
T |
|
| Q |
113 |
aa |
114 |
Q |
| |
|
|| |
|
|
| T |
41551645 |
aa |
41551644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 37556785 - 37556731
Alignment:
| Q |
16 |
atacctggtgataacctcctcttttcgtgacctccaagtaaaacaggtacaagtc |
70 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
37556785 |
atacctggtgaaaacctcctcttctggtgacttccaagtaaaagaggtacaagtc |
37556731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University