View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2625_low_12 (Length: 233)

Name: NF2625_low_12
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2625_low_12
NF2625_low_12
[»] chr6 (1 HSPs)
chr6 (1-194)||(7577535-7577728)
[»] chr4 (6 HSPs)
chr4 (31-130)||(8825009-8825108)
chr4 (2-62)||(10180560-10180620)
chr4 (27-62)||(30865993-30866028)
chr4 (2-62)||(26699124-26699184)
chr4 (2-62)||(42426837-42426897)
chr4 (30-58)||(54632466-54632494)
[»] chr8 (10 HSPs)
chr8 (2-62)||(23036912-23036972)
chr8 (31-118)||(1155112-1155202)
chr8 (2-62)||(13628983-13629043)
chr8 (2-62)||(13729395-13729455)
chr8 (1-62)||(5535739-5535800)
chr8 (1-62)||(38937910-38937971)
chr8 (5-57)||(3194846-3194898)
chr8 (31-63)||(23982365-23982397)
chr8 (30-62)||(31226444-31226476)
chr8 (29-65)||(36316847-36316883)
[»] chr5 (9 HSPs)
chr5 (2-62)||(26675426-26675486)
chr5 (2-62)||(26947034-26947094)
chr5 (4-65)||(29558451-29558512)
chr5 (1-65)||(42951664-42951728)
chr5 (36-66)||(2987965-2987995)
chr5 (36-65)||(11200509-11200538)
chr5 (39-130)||(2375594-2375688)
chr5 (31-63)||(14731017-14731049)
chr5 (1-53)||(34382720-34382772)
[»] chr7 (3 HSPs)
chr7 (2-60)||(31322259-31322317)
chr7 (2-62)||(19987277-19987338)
chr7 (15-60)||(44441711-44441756)
[»] chr3 (4 HSPs)
chr3 (12-62)||(43584602-43584652)
chr3 (2-62)||(13755099-13755159)
chr3 (2-62)||(13768500-13768560)
chr3 (2-58)||(46049006-46049062)
[»] chr1 (8 HSPs)
chr1 (15-65)||(27544486-27544536)
chr1 (46-130)||(47783644-47783731)
chr1 (2-58)||(36298105-36298161)
chr1 (36-130)||(43822822-43822919)
chr1 (31-62)||(51504508-51504539)
chr1 (2-54)||(5200572-5200624)
chr1 (2-117)||(11120611-11120729)
chr1 (15-63)||(42401116-42401164)
[»] chr2 (5 HSPs)
chr2 (1-62)||(31050054-31050115)
chr2 (2-62)||(16117858-16117918)
chr2 (28-65)||(8798670-8798707)
chr2 (1-62)||(41068742-41068803)
chr2 (2-62)||(15269314-15269374)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 7577728 - 7577535
Alignment:
Q  1 tcatttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaataatatttaataaaccttcaatttctcaaattcagatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7577728 tcatttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaataatatttaataaaccttcaatttctccaattcagatctt 7577629  T
Q  101 acacaaatttcttaaatggaacctactaattatgattaagtacatactttcacgagtcttactgtatgaattatgatgaagtaatgaacttgac 194  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7577628 acacaaatttcttaaatggaatctactaattatgattaagtacatactttcacgagtcttactgtatgaattatgatgaagtaatgaacttgac 7577535  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 8825108 - 8825009
Alignment:
Q  31 tgtatacatcactcatttataattttttaataatatttaataaaccttcaatttctcaaattcagatcttacacaaatttcttaaatggaacctactaat 130  Q
    ||||||||||||||||||||||||||||| || ||| ||||||   ||||||| ||  ||| || |||||||| ||| ||||||||||||||||||||||    
T  8825108 tgtatacatcactcatttataattttttagtagtatctaataagtattcaattacttcaatccatatcttacataaaattcttaaatggaacctactaat 8825009  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 10180560 - 10180620
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    ||||||| |||| ||||||||||| ||  |||| | |||||||||||||||||||||||||    
T  10180560 catttttaagtacttaaatggatctcacgtgtacatatcactcatttataattttttaata 10180620  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 30866028 - 30865993
Alignment:
Q  27 catatgtatacatcactcatttataattttttaata 62  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30866028 catatgtatacatcactcacttataattttttaata 30865993  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 26699184 - 26699124
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    |||||||| ||| ||||||||||| || ||||| |||||||||  |||||| |||||||||    
T  26699184 catttttgggtacttaaatggatcccacatgtacacatcactcgcttataaatttttaata 26699124  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 42426837 - 42426897
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    ||||||||||| |||||||||||| ||  |||| || | ||| ||||||||||||||||||    
T  42426837 catttttgagtttttaaatggatctcacgtgtacacgttacttatttataattttttaata 42426897  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 54632466 - 54632494
Alignment:
Q  30 atgtatacatcactcatttataatttttt 58  Q
    |||||||||||||||||||||||||||||    
T  54632466 atgtatacatcactcatttataatttttt 54632494  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 23036972 - 23036912
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    |||||||||||||||||||||||| ||| |||| |||||||||| ||||||||||| ||||    
T  23036972 catttttgagtatttaaatggatctcatttgtacacatcactcaattataatttttcaata 23036912  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 1155112 - 1155202
Alignment:
Q  31 tgtatacatcactcatttataattttttaataatatt---taataaaccttcaatttctcaaattcagatcttacacaaatttcttaaatg 118  Q
    |||| ||||||||||||||||||||||||||| || |   |||||| | ||||||  ||| ||  ||||||| ||||||||||||||||||    
T  1155112 tgtacacatcactcatttataattttttaatagtagtatctaataagcattcaatccctccaacccagatctcacacaaatttcttaaatg 1155202  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 13628983 - 13629043
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    |||||||||||  |||||||| || || ||||| |||||| ||||||||||||||||||||    
T  13628983 catttttgagttcttaaatgggtctcacatgtacacatcattcatttataattttttaata 13629043  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 13729395 - 13729455
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    |||||||||||  |||||||| || || ||||| |||||| ||||||||||||||||||||    
T  13729395 catttttgagttcttaaatgggtctcacatgtacacatcattcatttataattttttaata 13729455  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5535739 - 5535800
Alignment:
Q  1 tcatttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    ||||||||| || |||||||| ||  ||  |||| |||||||||||||||||||||||||||    
T  5535739 tcatttttgggtttttaaatgaattccacgtgtacacatcactcatttataattttttaata 5535800  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38937971 - 38937910
Alignment:
Q  1 tcatttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    |||||||||| | ||||||||||||  || |||| | |||||| ||||||||||||||||||    
T  38937971 tcatttttgaatttttaaatggatcttatgtgtacatatcacttatttataattttttaata 38937910  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 3194846 - 3194898
Alignment:
Q  5 ttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttt 57  Q
    |||| |||||||||||||||| |   |||| ||||||||||||||||||||||    
T  3194846 ttttaagtatttaaatggatctcgcgtgtacacatcactcatttataattttt 3194898  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 23982397 - 23982365
Alignment:
Q  31 tgtatacatcactcatttataattttttaataa 63  Q
    |||| ||||||||||||||||||||||||||||    
T  23982397 tgtacacatcactcatttataattttttaataa 23982365  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 31226444 - 31226476
Alignment:
Q  30 atgtatacatcactcatttataattttttaata 62  Q
    ||||| |||||||||||||||||||||||||||    
T  31226444 atgtacacatcactcatttataattttttaata 31226476  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 36316883 - 36316847
Alignment:
Q  29 tatgtatacatcactcatttataattttttaataata 65  Q
    |||||| |||||||||||||||||| |||||||||||    
T  36316883 tatgtacacatcactcatttataatattttaataata 36316847  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 26675426 - 26675486
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    |||||||| |||  ||||||| || |||||||| |||||||||||||||||||||||||||    
T  26675426 catttttgggtacctaaatgggtctcatatgtacacatcactcatttataattttttaata 26675486  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 26947034 - 26947094
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    |||||||| |||  ||||||| || |||||||| |||||||||||||||||||||||||||    
T  26947034 catttttgggtacctaaatgggtctcatatgtacacatcactcatttataattttttaata 26947094  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 29558512 - 29558451
Alignment:
Q  4 tttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaataata 65  Q
    ||||| |||| ||||||| ||| ||| |||| |||||||||||||| |||||||||||||||    
T  29558512 ttttttagtacttaaatgaatcacatgtgtacacatcactcatttacaattttttaataata 29558451  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42951664 - 42951728
Alignment:
Q  1 tcatttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaataata 65  Q
    ||||||||| ||  ||||||||||| || | | ||||||||||||||||||||||| ||||||||    
T  42951664 tcatttttgggttcttaaatggatcccacacgcatacatcactcatttataattttgtaataata 42951728  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 2987995 - 2987965
Alignment:
Q  36 acatcactcatttataattttttaataatat 66  Q
    |||||||||||||||||||||||||||||||    
T  2987995 acatcactcatttataattttttaataatat 2987965  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 11200538 - 11200509
Alignment:
Q  36 acatcactcatttataattttttaataata 65  Q
    ||||||||||||||||||||||||||||||    
T  11200538 acatcactcatttataattttttaataata 11200509  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 2375688 - 2375594
Alignment:
Q  39 tcactcatttataattttttaataatatt---taataaaccttcaatttctcaaattcagatcttacacaaatttcttaaatggaacctactaat 130  Q
    ||||| |||||||||||||||||| || |   |||||||| ||||||  |||||  ||| |||| ||||||| ||||||||||| ||| ||||||    
T  2375688 tcacttatttataattttttaatagtagtacctaataaacattcaatcactcaacctcaaatctcacacaaagttcttaaatgggacccactaat 2375594  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 14731049 - 14731017
Alignment:
Q  31 tgtatacatcactcatttataattttttaataa 63  Q
    ||||||| |||||||||||||||||||||||||    
T  14731049 tgtatacgtcactcatttataattttttaataa 14731017  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34382720 - 34382772
Alignment:
Q  1 tcatttttgagtatttaaatggatcgcatatgtatacatcactcatttataat 53  Q
    ||||||||||| ||||||||||||| ||  || | ||||||||||||||||||    
T  34382720 tcatttttgagcatttaaatggatcacacgtgcacacatcactcatttataat 34382772  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 31322259 - 31322317
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaa 60  Q
    |||||||  ||| |||||||| || |||||||| |||||||||||||||||||||||||    
T  31322259 cattttttggtacttaaatgggtcacatatgtacacatcactcatttataattttttaa 31322317  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 19987338 - 19987277
Alignment:
Q  2 catttttgagtatttaaatggatcg-catatgtatacatcactcatttataattttttaata 62  Q
    ||||||| ||||||||||||||||  || ||||| |||||| ||||||||||||||||||||    
T  19987338 cattttttagtatttaaatggatcctcacatgtacacatcattcatttataattttttaata 19987277  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 44441756 - 44441711
Alignment:
Q  15 ttaaatggatcgcatatgtatacatcactcatttataattttttaa 60  Q
    |||||||| || || ||||| |||||||||||||||||||||||||    
T  44441756 ttaaatgggtctcaaatgtacacatcactcatttataattttttaa 44441711  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 43584652 - 43584602
Alignment:
Q  12 tatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    |||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  43584652 tatttaaacggatcgtatgtgtaaacatcactcatttataattttttaata 43584602  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 13755099 - 13755159
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    ||||||| |||| ||||| || || ||  |||| |||||||||||||||||||||||||||    
T  13755099 cattttttagtacttaaacgggtcccacgtgtacacatcactcatttataattttttaata 13755159  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 13768500 - 13768560
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    ||||||| |||| ||||| || || ||  |||| |||||||||||||||||||||||||||    
T  13768500 cattttttagtacttaaacgggtcccacgtgtacacatcactcatttataattttttaata 13768560  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 46049062 - 46049006
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataatttttt 58  Q
    ||||||| |||| |||||||| || || ||||| |||| ||||||||||||||||||    
T  46049062 catttttaagtacttaaatgggtctcacatgtaaacattactcatttataatttttt 46049006  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 27544536 - 27544486
Alignment:
Q  15 ttaaatggatcgcatatgtatacatcactcatttataattttttaataata 65  Q
    |||||||| || ||| |||| ||||||||||||||||||||||||||||||    
T  27544536 ttaaatgggtctcatgtgtacacatcactcatttataattttttaataata 27544486  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 47783644 - 47783731
Alignment:
Q  46 tttataattttttaataata---tttaataaaccttcaatttctcaaattcagatcttacacaaatttcttaaatggaacctactaat 130  Q
    ||||||||||||||||||||   ||||||||||  |||||  ||| || ||| |||| ||||||| ||||||||||||||||| ||||    
T  47783644 tttataattttttaataatagtatttaataaacactcaatcactccaactcaaatctcacacaaagttcttaaatggaacctattaat 47783731  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 36298161 - 36298105
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataatttttt 58  Q
    ||||||||||| |||||||||||| || ||||| || ||||| ||||||||||||||    
T  36298161 catttttgagtttttaaatggatctcacatgtacacgtcacttatttataatttttt 36298105  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 43822919 - 43822822
Alignment:
Q  36 acatcactcatttataattttttaataatatt---taataaaccttcaatttctcaaattcagatcttacacaaatttcttaaatggaacctactaat 130  Q
    ||||||||||||||||||||||||||| || |   |||||| |  |||||| ||| ||  ||||||| ||||||| ||||||||||| ||| ||||||    
T  43822919 acatcactcatttataattttttaatagtagtatctaataagcactcaattcctccaacccagatctcacacaaagttcttaaatgggacccactaat 43822822  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 62
Target Start/End: Original strand, 51504508 - 51504539
Alignment:
Q  31 tgtatacatcactcatttataattttttaata 62  Q
    ||||||||||||||||||||||||||||||||    
T  51504508 tgtatacatcactcatttataattttttaata 51504539  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 5200572 - 5200624
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataatt 54  Q
    ||||||| | ||| ||||| |||||||| |||| |||||||||||||||||||    
T  5200572 cattttttaatatctaaattgatcgcatgtgtacacatcactcatttataatt 5200624  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 11120729 - 11120611
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaa---taatatttaataaaccttcaatttctcaaattcagatc 98  Q
    |||||||| || |||||||||||  ||  | || ||||||||||||||||||| |||||   || ||| ||||||||  |||||| ||| ||  ||||||    
T  11120729 catttttgggtttttaaatggataccacgtatacacatcactcatttataattctttaatagtagtatctaataaacactcaattactccaacgcagatc 11120630  T
Q  99 ttacacaaatttcttaaat 117  Q
    | ||||||| |||||||||    
T  11120629 tcacacaaagttcttaaat 11120611  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 42401164 - 42401116
Alignment:
Q  15 ttaaatggatcgcatatgtatacatcactcatttataattttttaataa 63  Q
    ||||| ||||| ||| |||| ||||||||| ||||||||||||||||||    
T  42401164 ttaaacggatcccatgtgtacacatcactcttttataattttttaataa 42401116  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31050054 - 31050115
Alignment:
Q  1 tcatttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    ||||||||||||| |||||||  || || ||||| |||||||| ||||||||||||||||||    
T  31050054 tcatttttgagtacttaaatgagtctcacatgtacacatcacttatttataattttttaata 31050115  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 16117858 - 16117918
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    ||||||| ||||||||||||| || ||  |||| | |||||||||||||||||||||||||    
T  16117858 cattttttagtatttaaatgggtctcacgtgtacatatcactcatttataattttttaata 16117918  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 8798670 - 8798707
Alignment:
Q  28 atatgtatacatcactcatttataattttttaataata 65  Q
    |||||| | |||||||||||||||||||||||||||||    
T  8798670 atatgtctgcatcactcatttataattttttaataata 8798707  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41068742 - 41068803
Alignment:
Q  1 tcatttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    ||||||||| |||||||||||| ||  |  ||||||||||| ||||||||||||||| ||||    
T  41068742 tcatttttgggtatttaaatgggtccaacgtgtatacatcattcatttataatttttaaata 41068803  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 15269374 - 15269314
Alignment:
Q  2 catttttgagtatttaaatggatcgcatatgtatacatcactcatttataattttttaata 62  Q
    |||||||  ||| |||||||| || || ||||| |||| ||||||||||||||||||||||    
T  15269374 catttttcggtacttaaatgggtctcacatgtacacattactcatttataattttttaata 15269314  T

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