View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2625_low_3 (Length: 395)
Name: NF2625_low_3
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 23484943 - 23485324
Alignment:
| Q |
10 |
taaaacactaataaccttttattttatta-aaaaatgtttcttattaatt----------aaagagttttatctattaccttaataagttatggataatt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23484943 |
taaaacactaataaccttttattttattacaaaaatgtttcttattaattaaagagaattaaagagttttatctattaccttaataatttatggataatt |
23485042 |
T |
|
| Q |
99 |
gtacaatgagaatatatattgtttacaaattaaatataaaaacagcatttcttaatttttgtgcattgatgaagaagaccttatatatagagaaacagat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23485043 |
gtacaatgagaatatatattgtttacaaattaaatataaaaacagcatttcttaatttttgtgcattgatgaagaagaccttatatatagagaaacagat |
23485142 |
T |
|
| Q |
199 |
gcattattattaaatataagga-gggaaatgaaaggtgaataaaagaagaaaaatggaagtgtgtactttagttactgaggggaggatgattgcaaactc |
297 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23485143 |
gcattattattaaatatatggatgggaaatgaaaggtgtataaaacaagaaaaatggaagtgtgtac-ttagttactgaggggaggatgattgcaaactc |
23485241 |
T |
|
| Q |
298 |
ttatcacccattcgtgccgtctgattgaatttaacatggtagaggaccactcactgcagactcctgcaacagatataaaaaca |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23485242 |
ttatcacccattcgtgccgtctgattgaatttaacatggtagaggaccactcactgcagactcctgcaacagatataaaaaca |
23485324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University