View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2625_low_9 (Length: 268)
Name: NF2625_low_9
Description: NF2625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2625_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 4284561 - 4284361
Alignment:
| Q |
1 |
ttttcgcggttcactggttttacagttgaaacttggaatgcttcattccttcgagaatttgcagttccaaacctaaannnnnnnctcagtaacaatcaaa |
100 |
Q |
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| T |
4284561 |
ttttcgcggttcactggttttgcagttgaaacttggaatgcttcattccttcgagaatttgcagttcaaaacctaaatttttt-ctcagtaataatcaaa |
4284463 |
T |
|
| Q |
101 |
tcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4284462 |
tcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatggc |
4284363 |
T |
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| Q |
201 |
gg |
202 |
Q |
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|| |
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| T |
4284362 |
gg |
4284361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 23429478 - 23429422
Alignment:
| Q |
142 |
caatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatg |
198 |
Q |
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|||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |
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| T |
23429478 |
caatggttcttcaattccacacaaacataatcacttaacttctagaagacaccaatg |
23429422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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