View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2627_high_1_N (Length: 251)
Name: NF2627_high_1_N
Description: NF2627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2627_high_1_N |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 9536016 - 9535879
Alignment:
| Q |
29 |
aaaaagagtatgactattgaatctgtgtttgatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatattt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9536016 |
aaaaagagtatgactattgaatctgtgtttgatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatattt |
9535917 |
T |
|
| Q |
129 |
aatcttttagaacaaatcaacaatcaatataaatacat |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9535916 |
aatcttttagaacaaatcaacaatcaatacaaatacat |
9535879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 9535820 - 9535741
Alignment:
| Q |
168 |
ttctgttagatgtggaaggatttccaacaacacctctactcagaattttacattgattaacgtcaccataagagacaata |
247 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
9535820 |
ttctgctagatgtggaaggatttccaacaacacctctactcagaattttacattgattaatatcaccacaagagacaata |
9535741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 27272334 - 27272207
Alignment:
| Q |
32 |
aagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattgaga-atttaaatattta |
129 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||| |||| ||| |||||||| |||||||| |||||||| |||||||||| || ||||| | | |
|
|
| T |
27272334 |
aagagtatgactattgaatttgtgtgcgacaatgataacaaaattaaaacaatgaaaatcaaataatattcaaagctgaattgagaggttcaaataatga |
27272235 |
T |
|
| Q |
130 |
atcttttagaacaaatcaacaatcaata |
157 |
Q |
| |
|
||||| | |||||||||| |||||||| |
|
|
| T |
27272234 |
atcttatgaaacaaatcaataatcaata |
27272207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 17350067 - 17349939
Alignment:
| Q |
31 |
aaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaa-tttaaatattt |
128 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||||||| |||| |||||||||||| || || || ||||||||||||||||||||| || ||||| | |
|
|
| T |
17350067 |
aaagagtatgactattgaatttgtgcttagtgatgataacaaaattaagacaatgaaaataaactaagattcaaaggtgaattgagaagttcaaataatg |
17349968 |
T |
|
| Q |
129 |
aatcttttagaacaaatcaacaatcaata |
157 |
Q |
| |
|
| |||| || | |||||||||||||||| |
|
|
| T |
17349967 |
actcttataaagaaaatcaacaatcaata |
17349939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 6142 - 6241
Alignment:
| Q |
37 |
tatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattgaga-atttaaatatttaatctt |
134 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| |||| |||||||||||||| |||||| ||||||||| | |||||||| ||||||||| | |||||| |
|
|
| T |
6142 |
tatgactattgaatttgtgcatgatgatgataacaaaattaagacaatgaataacaaataagattcaaagctaaattgagagatttaaataatgaatctt |
6241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 23142370 - 23142442
Alignment:
| Q |
43 |
tattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattga |
114 |
Q |
| |
|
|||||||| |||| |||||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
23142370 |
tattgaatttgtgcgtgatgatgataacaaaattaagacaatgaatatcaaataagattcaaagttgaattga |
23142442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 16192236 - 16192154
Alignment:
| Q |
32 |
aagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattg |
113 |
Q |
| |
|
|||||||||||||| |||| |||| | |||||||||| |||| || |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
16192236 |
aagagtatgactatcgaatttgtgcgtaatgatgataacaaaattaggacaatgaatatcaaataagattcaaatgtgaattg |
16192154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 3462286 - 3462372
Alignment:
| Q |
32 |
aagagtatgacta-ttgaatctgtgtttgatgatgataaaaaact-aagacaatgaatatcaaatatgattcaaaggtgaattgaga |
116 |
Q |
| |
|
||||||||||||| ||| || |||| |||||||||||| ||| | |||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
3462286 |
aagagtatgactaattgcatttgtgcgtgatgatgataacaaaatcaagacaatgaatatcaaataagatttaaaggtgaattgaga |
3462372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University