View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2627_low_1_N (Length: 323)

Name: NF2627_low_1_N
Description: NF2627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2627_low_1_N
NF2627_low_1_N
[»] chr8 (2 HSPs)
chr8 (13-294)||(11402001-11402279)
chr8 (182-277)||(11403127-11403222)
[»] chr6 (2 HSPs)
chr6 (42-144)||(29303559-29303658)
chr6 (182-277)||(29303714-29303809)
[»] chr5 (4 HSPs)
chr5 (42-144)||(12529384-12529483)
chr5 (42-144)||(35841539-35841638)
chr5 (182-277)||(12529233-12529328)
chr5 (182-294)||(35841694-35841806)
[»] chr4 (5 HSPs)
chr4 (42-144)||(27730597-27730696)
chr4 (42-144)||(45965826-45965925)
chr4 (182-294)||(27730429-27730541)
chr4 (182-294)||(45965981-45966093)
chr4 (64-144)||(24146585-24146665)
[»] chr1 (3 HSPs)
chr1 (42-144)||(29282638-29282737)
chr1 (42-144)||(49220633-49220732)
chr1 (182-277)||(29282487-29282582)
[»] chr2 (4 HSPs)
chr2 (42-144)||(42913497-42913596)
chr2 (177-287)||(42300562-42300672)
chr2 (42-144)||(42300412-42300511)
chr2 (177-277)||(42913346-42913446)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 11402001 - 11402279
Alignment:
Q  13 aatatcacaaattatcaaagaaataaagagggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402001 aatatcacaaattatcaaagaaataaagagggacatattgaagtt---gttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgt 11402097  T
Q  113 agagattacgaaaggtatgaaatgtcaagttcatggaacaatatttttctcccgttacaaaatttgagcgtgtatggagaaaatattatggataacaagg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11402098 agagattacgaaaggtatgaaatgtcaagttcatggaacaatatttttctcctgttacaaaatttgagcgtgtatggagaaaatattatggataacaagg 11402197  T
Q  213 tggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggagctccacgatattgatac 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402198 tggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggagctccacgatattgatac 11402279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 11403222 - 11403127
Alignment:
Q  182 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggag 277  Q
    |||||||||||| |||||  ||||| ||||||||||||||||| ||||   | ||||| ||| ||  ||| |||||||||||||||||||||||||    
T  11403222 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgataaagtttggtcatgtggtgactacgataatggag 11403127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 29303559 - 29303658
Alignment:
Q  42 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 141  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  29303559 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 29303655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 29303714 - 29303809
Alignment:
Q  182 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggag 277  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| |||||    
T  29303714 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggag 29303809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 12529483 - 12529384
Alignment:
Q  42 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 141  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  12529483 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 12529387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 35841539 - 35841638
Alignment:
Q  42 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 141  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  35841539 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 35841635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 12529328 - 12529233
Alignment:
Q  182 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggag 277  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| |||||    
T  12529328 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggag 12529233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 35841694 - 35841806
Alignment:
Q  182 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggagctcc 281  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  ||||||||||||||||| |||| |||||  ||    
T  35841694 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactatgatattggagtccc 35841793  T
Q  282 acgatattgatac 294  Q
    | |||| ||||||    
T  35841794 atgatactgatac 35841806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 27730696 - 27730597
Alignment:
Q  42 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 141  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  27730696 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 27730600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 45965826 - 45965925
Alignment:
Q  42 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 141  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  45965826 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 45965922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 27730541 - 27730429
Alignment:
Q  182 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggagctcc 281  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| |||||  ||    
T  27730541 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 27730442  T
Q  282 acgatattgatac 294  Q
    | |||| ||||||    
T  27730441 atgatactgatac 27730429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 45965981 - 45966093
Alignment:
Q  182 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggagctcc 281  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| |||||  ||    
T  45965981 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 45966080  T
Q  282 acgatattgatac 294  Q
    | ||||| |||||    
T  45966081 atgatatcgatac 45966093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 24146585 - 24146665
Alignment:
Q  64 acatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 144  Q
    |||| |||||||  ||||| ||| ||||| |||  |||| |||||| ||||||| |||||||||||||||||||| |||||    
T  24146585 acataaaggagtgaagaaagctcagaaatcaaagttgcagtctctgcgtagagagtacgaaaggtatgaaatgtctagttc 24146665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 29282737 - 29282638
Alignment:
Q  42 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 141  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  29282737 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 29282641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 49220732 - 49220633
Alignment:
Q  42 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 141  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| ||    
T  49220732 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 49220636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 29282582 - 29282487
Alignment:
Q  182 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggag 277  Q
    |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| |||||    
T  29282582 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggag 29282487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 42913596 - 42913497
Alignment:
Q  42 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 141  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| |||  |||| |||||| ||||||| |||||||||||||||||||| ||    
T  42913596 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagttgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 42913500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 42300562 - 42300672
Alignment:
Q  177 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 276  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||||| |  |||  |||||||  |||||||||||||||||||||| ||||    
T  42300562 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctatgcaccatgccgatgaaatatgatcatgtggtgactacgatattgga 42300661  T
Q  277 gctccacgata 287  Q
    |  ||||||||    
T  42300662 gtcccacgata 42300672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 42300412 - 42300511
Alignment:
Q  42 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaag 141  Q
    ||||||||||||||||   || |||| |||||||||||||| ||  ||||| |||  |||| |||||| ||||||| |||||||||||||||||||| ||    
T  42300412 gggacatattgaagtt---gtcacataaaggagtagagaaagcttagaaatcaaagttgcagtctctgcgtagagaatacgaaaggtatgaaatgtccag 42300508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 42913446 - 42913346
Alignment:
Q  177 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 276  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| ||||    
T  42913446 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattgga 42913347  T
Q  277 g 277  Q
    |    
T  42913346 g 42913346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University