View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2627_low_2 (Length: 365)

Name: NF2627_low_2
Description: NF2627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2627_low_2
NF2627_low_2
[»] chr6 (5 HSPs)
chr6 (19-171)||(9684817-9684969)
chr6 (209-360)||(9684970-9685121)
chr6 (34-172)||(9685011-9685149)
chr6 (230-346)||(9684810-9684928)
chr6 (177-219)||(9685176-9685218)
[»] chr3 (3 HSPs)
chr3 (247-344)||(26023664-26023764)
chr3 (283-347)||(48777020-48777084)
chr3 (283-347)||(6868199-6868262)
[»] chr4 (2 HSPs)
chr4 (280-358)||(19266569-19266647)
chr4 (280-346)||(46954268-46954334)
[»] chr2 (1 HSPs)
chr2 (282-349)||(45366822-45366889)
[»] chr5 (2 HSPs)
chr5 (280-349)||(8132191-8132259)
chr5 (263-300)||(15596380-15596419)
[»] scaffold0276 (1 HSPs)
scaffold0276 (251-303)||(12408-12460)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 9684817 - 9684969
Alignment:
Q  19 gtattactttatgaaattaattttcatgcactgccggtgtaaaacttttacggatgcatccaattaaatcgcactgcaatgacacttttatatgttagtt 118  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9684817 gtattactttatgagattaatttccatgcactgacggtgtaaaacttttacggatgcatccaattaaatcgcactacaatgacacttttatatgttagtt 9684916  T
Q  119 cctaaaatatctacaaaaatatgtacataacttgatttgattgaatgtatgtg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9684917 cctaaaatatctacaaaaatatgtacataacttgatttgattgaatgtatgtg 9684969  T

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Target: chr6; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 209 - 360
Target Start/End: Original strand, 9684970 - 9685121
Alignment:
Q  209 gttaataatttgattgaatgtatgttttgtattattttgagattaatttacatccattgacaatgtaaaacttttacacatgcatccaatcaaattatac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  9684970 gttaataatttgattgaatgtatgttttgtattattttgagattaatttacatgcattgacaatgtaaaacttttacacatgcatccaatcaaatcatac 9685069  T
Q  309 tatagtgctacttttataagttagttcctaaaatatctccagaattatctac 360  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  9685070 tatagtgctacttttataagttagtttctaaaatatctccagaaatatctac 9685121  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 9685011 - 9685149
Alignment:
Q  34 attaattttcatgcactgccggtgtaaaacttttacggatgcatccaattaaatcgcactgcaatgacacttttatatgttagttcctaaaatatctaca 133  Q
    |||||||| |||||| || |  ||||||||||||||  ||||||||||| |||||  |||  | ||  ||||||||| ||||||| ||||||||||| ||    
T  9685011 attaatttacatgcattgacaatgtaaaacttttacacatgcatccaatcaaatcatactatagtgctacttttataagttagtttctaaaatatctcca 9685110  T
Q  134 aaaatatgtacataacttgatttgattgaatgtatgtgt 172  Q
     |||||| |||||| ||||||||||||||||| ||||||    
T  9685111 gaaatatctacatatcttgatttgattgaatgcatgtgt 9685149  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 9684810 - 9684928
Alignment:
Q  230 atgttttgtattatttt--gagattaatttacatccattgacaatgtaaaacttttacacatgcatccaatcaaattatactatagtgctacttttataa 327  Q
    ||||||||||||| |||  ||||||||||| ||| || ||||  ||||||||||||||  ||||||||||| ||||   |||| | ||  |||||||||     
T  9684810 atgttttgtattactttatgagattaatttccatgcactgacggtgtaaaacttttacggatgcatccaattaaatcgcactacaatgacacttttatat 9684909  T
Q  328 gttagttcctaaaatatct 346  Q
    |||||||||||||||||||    
T  9684910 gttagttcctaaaatatct 9684928  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 9685176 - 9685218
Alignment:
Q  177 acaaattaaatcgttattttatattatttcttgttaataattt 219  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  9685176 acaaattaaatcattattttatattattttttgttaataattt 9685218  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 26023764 - 26023664
Alignment:
Q  247 gagattaatttacatccattgacaatgtaaaactttt---acacatgcatccaatcaaattatactatagtgctacttttataagttagttcctaaaata 343  Q
    |||||||||||  || |||||||   |||||||||||   |||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||    
T  26023764 gagattaatttgtatacattgacggcgtaaaacttttttaacacatgcatccaatcaaatcataccatagtgccacttttataggttagttcctaaaata 26023665  T
Q  344 t 344  Q
    |    
T  26023664 t 26023664  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 48777020 - 48777084
Alignment:
Q  283 tacacatgcatccaatcaaattatactatagtgctacttttataagttagttcctaaaatatctc 347  Q
    |||||||| |||||||||||| | || | ||||| ||||||||||||| ||||||||| ||||||    
T  48777020 tacacatgaatccaatcaaatcacacgaaagtgccacttttataagtttgttcctaaattatctc 48777084  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 6868262 - 6868199
Alignment:
Q  283 tacacatgcatccaatcaaattatactatagtgctacttttataagttagttcctaaaatatctc 347  Q
    ||||||||||||| ||||||| | ||||||| || || |||||| ||||||| ||||||||||||    
T  6868262 tacacatgcatccgatcaaatcacactatagggccac-tttataggttagtttctaaaatatctc 6868199  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 19266647 - 19266569
Alignment:
Q  280 ttttacacatgcatccaatcaaattatactatagtgctacttttataagttagttcctaaaatatctccagaattatct 358  Q
    ||||||||||| |||||||||||||  || | ||||| ||||||| ||||||||| || ||||||||||| || |||||    
T  19266647 ttttacacatgtatccaatcaaattgcacgaaagtgccacttttacaagttagttacttaaatatctccacaaatatct 19266569  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 46954334 - 46954268
Alignment:
Q  280 ttttacacatgcatccaatcaaattatactatagtgctacttttataagttagttcctaaaatatct 346  Q
    ||||| ||||||||||||||| || ||| |||||| | | |||||||||||||| | ||||||||||    
T  46954334 ttttatacatgcatccaatcatatcatattatagtacaatttttataagttagtacataaaatatct 46954268  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 45366889 - 45366822
Alignment:
Q  282 ttacacatgcatccaatcaaattatactatagtgctacttttataagttagttcctaaaatatctcca 349  Q
    |||||||||  || |||||||||| || |||||||  |||||||| |||||||| |||||||||||||    
T  45366889 ttacacatgtgtcaaatcaaattacaccatagtgccgcttttataggttagttcataaaatatctcca 45366822  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 8132191 - 8132259
Alignment:
Q  280 ttttacacatgcatccaatcaaattatactatagtgctacttttataagttagttcctaaaatatctcca 349  Q
    ||||| ||||| ||| |||||||| | |  ||||||| ||||||||||||||||| ||||||||||||||    
T  8132191 ttttaaacatgtatctaatcaaatcacatcatagtgc-acttttataagttagtttctaaaatatctcca 8132259  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 15596380 - 15596419
Alignment:
Q  263 cattgacaatgtaaaact--tttacacatgcatccaatca 300  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  15596380 cattgacaatgtaaaactcttttacacatgcatccaatca 15596419  T

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Target: scaffold0276 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 12408 - 12460
Alignment:
Q  251 ttaatttacatccattgacaatgtaaaacttttacacatgcatccaatcaaat 303  Q
    ||||||||||| ||  ||||| ||||  |||||||||||||||||||||||||    
T  12408 ttaatttacatacaccgacaaagtaattcttttacacatgcatccaatcaaat 12460  T

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