View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2627_low_3 (Length: 250)
Name: NF2627_low_3
Description: NF2627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2627_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 2233626 - 2233548
Alignment:
| Q |
102 |
agaaacaaacaaaaaatcaaattttgacacaaacccattttcatttcaatcaaacacatgccatttcccaatagccagc |
180 |
Q |
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| T |
2233626 |
agaaacaaacaaaaaatcaaattttgacacaaacccattttcatttcaatcaaacacatgccatttcccaatagccagc |
2233548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 2233779 - 2233702
Alignment:
| Q |
13 |
aatatcaaaaatcaattctacaactctagaatcaattaactcatcataaagtgaaaccaaacatgcaccaaattatta |
90 |
Q |
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| T |
2233779 |
aatatcaaaaatcaattctacaactctagaatcaattaactcatcttaaagtgaaaccaaacatgcaccaaattatta |
2233702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 2233492 - 2233445
Alignment:
| Q |
112 |
aaaaaatcaaattttgacacaaacccattttcatttcaatcaaacaca |
159 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2233492 |
aaaatatcaaattttgacacaaacccatttgcatttcaatcaaacaca |
2233445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 35995182 - 35995153
Alignment:
| Q |
20 |
aaaatcaattctacaactctagaatcaatt |
49 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35995182 |
aaaatcaattctacaactctagaatcaatt |
35995153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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