View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629-Insertion-1 (Length: 912)
Name: NF2629-Insertion-1
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629-Insertion-1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 645; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 136 - 912
Target Start/End: Complemental strand, 3121691 - 3120935
Alignment:
| Q |
136 |
cagaaaaattaggcaatagtttcttttgcatttaattactgatttattgtacacgtaattccttatatttatatggaaaacacattccattgcttcttcc |
235 |
Q |
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| T |
3121691 |
cagaaaaattaggcaatggtttcttttgcatttaattactgatttattgtacacgtaattccttatatttatatggaaaacacattccattgcttcttcc |
3121592 |
T |
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| Q |
236 |
atccatcc----ctcacagtcatctttcaaaaactctcttaacagttttctacatttctaaacaaaacttgttactttttattacaatatggctcatttg |
331 |
Q |
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| T |
3121591 |
atccatccatccctcacagtcatctttcaaaaactctc----------------------aacaaaacttgttactttttattaaaatatggctcatttg |
3121514 |
T |
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| Q |
332 |
gtttatggtgaaattccatcttttggaaactcacaccatggacaaggtcaacaacttgttccatttccaaccacttcaacttccttaaggatccttctct |
431 |
Q |
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| T |
3121513 |
gtttatggtgaaactccatcttttggaaactcaacccatggacaaggtcaacaacttgttccatttccaaccacttcaacttccttaaggatccttctct |
3121414 |
T |
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| Q |
432 |
tacatggcaacttagaaatttgcatccaagaggccaaaaaccttcctaacatggacacttttcacaagaacttgggggcaatgctttcaatcctacctaa |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3121413 |
tacatggcaacttagaaatttgcatccaagaggccaaaaaccttcctaacatggacacttttcacaagaacttgggggcaatgctttcaatcctacctaa |
3121314 |
T |
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| Q |
532 |
gaaacttggtaacaaaatgaaccaaaccagtgatccatatgtcacagtttctgtggctggtgctgtgattgcaagaacttctgtgatcagaaatgatgag |
631 |
Q |
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| T |
3121313 |
gaaacttggtaacaaaatgaaccaaaccagtgatccatatgtcacagtttctgtggctggtgctgtgattgctagaacttctgtgatcagaaatgatgag |
3121214 |
T |
|
| Q |
632 |
aaccctgtttggatgcaacattttaatgtacctgttgcacaccaagcatcagagattcactttgttgtaaaagacagtgatattgttggttcacagctta |
731 |
Q |
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| T |
3121213 |
aaccctgtttggatgcaacattttaatgtacctgttgcacatcaagcatcagagattcactttgttgtaaaagacagtgatattgttggttcacagctta |
3121114 |
T |
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| Q |
732 |
ttggtgcagttggaattccagttgaaaagttatgtgatggtgcaaaagttgaaggctttttccccattcttaatactaatggaaaacccttcaagaccca |
831 |
Q |
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| T |
3121113 |
ttggtgcagttggaattccagttgaaaagttatgtgatggtgcaaaagttgaaggctttttccccattcttaatactaatggaaaacccttcaaga-ccg |
3121015 |
T |
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| Q |
832 |
aaaccgttttgagcttatcaattcagtatactcctattgataagataacgctttatagcaatgggtgttggttctgattat |
912 |
Q |
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| T |
3121014 |
aaaccgttttgagcttatcaattcagtatactcctattgataagataacgctttatagcaat-ggtgttggttctgattat |
3120935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 267 - 895
Target Start/End: Complemental strand, 3115740 - 3115095
Alignment:
| Q |
267 |
ctcttaacagttttctacatttctaaacaaaacttgttactttttattacaatatggctcatttggtttatggtgaaattccatcttttggaaactcaca |
366 |
Q |
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|||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3115740 |
ctctaaacaattttctacatttttaaacaaaacttgttactttttattaaaatatggctcatttggtttatggtgaaactccatcttttggaaactcaca |
3115641 |
T |
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| Q |
367 |
ccatggacaaggtcaacaacttgttccatttccaaccacttcaacttccttaaggatccttctcttacatggcaacttagaaatttgcatccaagaggcc |
466 |
Q |
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| T |
3115640 |
ccatggacaaggtcaacaacttgttccatttccaaccacttcaacttccttaaggatcttactcttacatggcaacttagaaatatgcgtccaagaagcg |
3115541 |
T |
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| Q |
467 |
aaaaaccttcctaacatggacacttttcacaagaacttgggggcaatgctttcaatcctacctaagaaacttggt---aa---------caaaatg---- |
550 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||| ||||| || ||||||| ||||||||| || ||||||| |
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| T |
3115540 |
aaaaaccttcctaacatggacacttttcacaagaaagtgggggaaatgttttcagtcttacctaaaaaacttggtggcaaaattgaaggcaaaatgtctc |
3115441 |
T |
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| Q |
551 |
--aaccaaaccagtgatccatatgtcacagtttctgtggctggtgctgtgattgcaagaacttctgtgatcagaaatgatgagaaccctgtttggatgca |
648 |
Q |
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| T |
3115440 |
gtaatataaccagtgatccatatgtaactgtttctgtagctggtgctgttattgcaagaacttttgtaattagaaacaatgagaaccctgtttggaatca |
3115341 |
T |
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| Q |
649 |
acattttaatgtacctgttgcacaccaagcatcagagattcactttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaatt |
748 |
Q |
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|| || ||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
3115340 |
gcacttcaatgtacctgttgcacatcttgcatcagaaattcactttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaatt |
3115241 |
T |
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| Q |
749 |
ccagttgaaaagttatgtgatggtgcaaaagttgaaggctttttccccattcttaatactaatggaaaacccttcaagacccaaaaccgttttgagctta |
848 |
Q |
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||||| ||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| |||| | || | |||||||||| |
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| T |
3115240 |
ccagtagaaaaattatgtgatggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaaga-ctgaagcaattttgagcttg |
3115142 |
T |
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| Q |
849 |
tcaattcagtatactcctattgataagataacgctttatagcaatgg |
895 |
Q |
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|||||||||||||| ||| |||||||| || | |||||||||||||| |
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| T |
3115141 |
tcaattcagtatacacctgttgataaggtagccctttatagcaatgg |
3115095 |
T |
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