View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629-Insertion-2 (Length: 798)
Name: NF2629-Insertion-2
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 741; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 7 - 798
Target Start/End: Complemental strand, 40652171 - 40651377
Alignment:
| Q |
7 |
acaaatagagctaccaaagctggctactggaaagccactggaaaagagagaaagattgtgtgccggtgtagttcatccactatcacaggcaactgcaaaa |
106 |
Q |
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| T |
40652171 |
acaaatagagctaccaaagctggctactggaaagccactggaaaagagagaaagattgtgtgccggtgtagttcatccactatcacaggcaactgcaaaa |
40652072 |
T |
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| Q |
107 |
cactcgttttctatcttggaagggctcctttaggcgatagaactaactggatcatgcatgagtatcgcctcactgatgatcttagccaagactcaccata |
206 |
Q |
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| T |
40652071 |
cactcgttttctatcttggaagggctcctttaggcgatagaactaactggatcatgcatgagtatcgcctcaccgatgatcttagccaagactcaccata |
40651972 |
T |
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| Q |
207 |
ttttaaggtacatataatacattaattaagttttatgtagcgtctgtgtattttcacggtctctcaatgttgaacgcacgtcaattgcaaggctatgatc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40651971 |
ttttaaggtacatataatacattaattaagttttatgtagcgtctgtgtattttcacggtctctcaatgttgaacgcacgtcaattgcaaggctatgatc |
40651872 |
T |
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| Q |
307 |
tggagcttttactttagcgtgcggtggttcaatgcccacagtg-aaaacaacaccttagtaatgtgttagctttgttttgtccttagctttaacggaacg |
405 |
Q |
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| T |
40651871 |
tggagcttttactttagcgtgcggtggttcaatgcccacagtgaaaaaaaacaccttagtaatgtgttagctttgttttgaccttagctttaacggaacg |
40651772 |
T |
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| Q |
406 |
ttgaaagactaaagtaggtgtgtat--gtgcacgcgcgcgcatgcatatatgtggttgctgtagggtggcttagctttgtgtcgagttataaaaaagaat |
503 |
Q |
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| T |
40651771 |
ttgaaagactaaagtaggtgtgtgtgcgtgcacgcgcgcacatgcatatatgtggttgctgtagggtggcttagctttgtgtcgagttataaaaaagaat |
40651672 |
T |
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| Q |
504 |
gagaagagcaagagggttgcaacaagttccatcaatggaagtgagacctcaatgagattctcaagtgatgtttcttctcaagcaagtcacctgaataatg |
603 |
Q |
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| T |
40651671 |
gagaagagcaagagggttgcaacaagttccatcaatggaagtgagacctcaatgagattctcaagtgatgtttcttctcaagcaagtcacctgaataatg |
40651572 |
T |
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| Q |
604 |
gatcacaaaatgtggctacaattgctgagtttaaccatgtttccatagaaacaaatccttcaaccttctggatctcccctgatatgattcttgattcttc |
703 |
Q |
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| T |
40651571 |
gatcacaaaatgtggctacaattgctgagtttaaccatgtttccatagaaacaaatccttcaaccttctggatctcccctgatatgattcttgattcttc |
40651472 |
T |
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| Q |
704 |
aaaggtatata-tttttaattttattcattattatcatatgtaacaaattaggaaatatgtgattgaatggctataatttggagacgttaccgaca |
798 |
Q |
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| T |
40651471 |
aaaggtatatattttttaattttattcattattatcatatg-aacaaattaggaaatatgtgattgaatggctataatttggagacgttaccgaca |
40651377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 4777015 - 4777061
Alignment:
| Q |
7 |
acaaatagagctaccaaagctggctactggaaagccactggaaaaga |
53 |
Q |
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| T |
4777015 |
acaaatagagccacgaaagctggctactggaaagccactggaaaaga |
4777061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 4777143 - 4777216
Alignment:
| Q |
123 |
tggaagggctcctttaggcgatagaactaactggatcatgcatgagtatcgcctcactgatgatcttagccaag |
196 |
Q |
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| T |
4777143 |
tggaagagctcctttaggtgatcgaaccaactgggtcatgcatgaatatcgcctcaacgatgatcctagccaag |
4777216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 710
Target Start/End: Original strand, 4777572 - 4777625
Alignment:
| Q |
657 |
aatccttcaaccttctggatctcccctgatatgattcttgattcttcaaaggta |
710 |
Q |
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|||||| |||| |||||| | |||||||| |||||||||||||||||||||||| |
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| T |
4777572 |
aatcctacaacattctggctgtcccctgacatgattcttgattcttcaaaggta |
4777625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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