View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2629-Insertion-3 (Length: 759)

Name: NF2629-Insertion-3
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2629-Insertion-3
NF2629-Insertion-3
[»] chr3 (6 HSPs)
chr3 (8-759)||(5372203-5372955)
chr3 (280-476)||(5357757-5357952)
chr3 (92-140)||(31314120-31314168)
chr3 (92-143)||(29196952-29197003)
chr3 (92-141)||(44701012-44701062)
chr3 (92-141)||(9666988-9667037)
[»] chr1 (6 HSPs)
chr1 (16-141)||(8871540-8871666)
chr1 (92-156)||(776832-776896)
chr1 (92-156)||(50167688-50167752)
chr1 (92-143)||(28266108-28266159)
chr1 (92-141)||(45644849-45644898)
chr1 (13-42)||(50167608-50167637)
[»] chr6 (2 HSPs)
chr6 (10-142)||(4045012-4045144)
chr6 (92-141)||(3039456-3039505)
[»] chr7 (3 HSPs)
chr7 (92-144)||(12098319-12098371)
chr7 (92-141)||(41317985-41318034)
chr7 (92-139)||(24526439-24526486)
[»] chr4 (4 HSPs)
chr4 (92-143)||(52467854-52467905)
chr4 (92-146)||(45687716-45687770)
chr4 (92-142)||(46147860-46147910)
chr4 (92-142)||(36463922-36463972)
[»] chr2 (2 HSPs)
chr2 (89-142)||(36773146-36773200)
chr2 (89-142)||(33162946-33162999)
[»] chr8 (4 HSPs)
chr8 (92-141)||(5688849-5688898)
chr8 (96-141)||(30291216-30291261)
chr8 (92-139)||(18141421-18141468)
chr8 (89-139)||(40320686-40320736)


Alignment Details
Target: chr3 (Bit Score: 697; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 8 - 759
Target Start/End: Complemental strand, 5372955 - 5372203
Alignment:
Q  8 gtttgctcctgcatcgtgccacgatttttccagtgaaaccttccttaagcacacctaaaatcgtgccactcttccatgcccacatgccacgattttttca 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372955 gtttgctcctgcatcgtgccacgatttttccagtgaaacctcccttaagcacacctaaaatcgtgccactcttccatgcccacatgccacgattttttca 5372856  T
Q  108 gatttcaacatcaattttgagacacatttcaacaattttccaccttgacggattctttttcgacttgcaagtattagtttcttgaacttgtaatttgtaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372855 gatttcaacatcaattttgagacacatttcaacaattttccaccttgacggattctttttcgacttgcaagtattagtttcttgaacttgtaatttgtaa 5372756  T
Q  208 acattactttattgatcaggtgtacaagggtggacaaagttttgatttatttggttagagccttcgactatatgtgcaaagttttatatcctttgacttt 307  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  5372755 acattactttattgatcaggtgtacaaggttggacaaagttttgatttatttggttagagcctttgactatatgtgcaaagttttctatcctttgacttt 5372656  T
Q  308 atgaatgcttaagataagattcacacatttgtagtctaagtatatatgcacattctcttgtaattgctggtgaggttttggaagaagaatccaagaaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372655 atgaatgcttaagataagattcacacatttgtagtctaagtatatatgcacattctcttgtaattgctggtgaggttttggaagaagaatccaagaaaaa 5372556  T
Q  408 tgaagaactatgatgatatatggaaggtattccatatacaagtgttttagcatctcttatgtatgctatttgttggcatgataataatttaataaaggtt 507  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372555 tgaagaactatgataatatatggaaggtattccatatacaagtgttttagcatctcttatgtatgctatttgttggcatgataataatttaataaaggtt 5372456  T
Q  508 cttccaagtaggaagttttccactgcttggagttgattcaattgaagggagactaatccctttggggctgcagtcactgggtctaaaattggtcttgttt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372455 cttccaagtaggaagttttccactgcttggagttgattcaattgaagggagactaatccctttggggctgcagtcactgggtctaaaattggtcttgttt 5372356  T
Q  608 ctgaaacaatgtggataatagttggttaacggattcagttaaaacttttatgaactaattttgttgtaataactatttgagttagttaactgcttataac 707  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372355 cagaaacaatgtggataatagttggttaacggattcagttaaaacttttatgaactaattttgttgtaataactatttgagttagttaactgcttataac 5372256  T
Q  708 tata-nnnnnnnngttaatccttcggttatcaggggaatgaggctctgttaat 759  Q
    ||||         ||||||||||||||||||||||||||||||||||||||||    
T  5372255 tatatttttttttgttaatccttcggttatcaggggaatgaggctctgttaat 5372203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 280 - 476
Target Start/End: Complemental strand, 5357952 - 5357757
Alignment:
Q  280 tgtgcaaagttttatatcctttgactttatgaatgcttaagata--agattcacacatttgtagtctaagtatatatgcacattctcttgtaattgctgg 377  Q
    |||| |||||||  || |||| |||||||||||||||| |||||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |    
T  5357952 tgtgtaaagtttattacccttcgactttatgaatgcttgagatatgagattcacacatttgtagtctaagaatatatgcacattctcttgtagttgctag 5357853  T
Q  378 tgaggttttggaagaagaatccaagaaaaatgaagaactatgatgatatatggaaggtattccatatacaagtgttttagcatctcttatgtatgctat 476  Q
    |||||||||||||||||  |||||||||| ||||||| ||| ||  ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  5357852 tgaggttttggaagaagcctccaagaaaattgaagaattat-at--tatatggaaggcattgcatatacaagtgttttagcatctcttatgtgtgctat 5357757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 31314168 - 31314120
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaac 140  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  31314168 tgccacgattttttcaaacttcaacatcaattttgagacacatttcaac 31314120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 29196952 - 29197003
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaacaat 143  Q
    ||||||||||||  || | |||||||||||||||||||||||||||||||||    
T  29196952 tgccacgattttcccaaacttcaacatcaattttgagacacatttcaacaat 29197003  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 44701012 - 44701062
Alignment:
Q  92 tgccacgattttttc-agatttcaacatcaattttgagacacatttcaaca 141  Q
    ||||||| ||||||| ||| ||||| |||||||||||||||||||||||||    
T  44701012 tgccacggttttttccagacttcaaaatcaattttgagacacatttcaaca 44701062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 9666988 - 9667037
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaaca 141  Q
    |||||||||| || || | |||||||| ||||||||||||||||||||||    
T  9666988 tgccacgattgttccaaacttcaacattaattttgagacacatttcaaca 9667037  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 8871540 - 8871666
Alignment:
Q  16 ctgcatcgtgccacgatttttccagtgaaa-ccttccttaagcacacctaaaatcgtgccactcttccatgcccacatgccacgattttttcagatttca 114  Q
    |||||||||||||||||||||||||||| | ||| || ||| |||||| ||||||||| |||  | || |||  || ||||||||||||| |||| ||||    
T  8871540 ctgcatcgtgccacgatttttccagtgacagcctaccataaacacacccaaaatcgtgtcacgttgccctgcaaacgtgccacgatttttccagacttca 8871639  T
Q  115 acatcaattttgagacacatttcaaca 141  Q
    |||||||||||||||||||||||||||    
T  8871640 acatcaattttgagacacatttcaaca 8871666  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 776896 - 776832
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaacaattttccaccttgac 156  Q
    ||||||||||||| || | |||||| |||||||||||||||||||||||| || |||||||||||    
T  776896 tgccacgatttttccaaacttcaacttcaattttgagacacatttcaacatttctccaccttgac 776832  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 50167688 - 50167752
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaacaattttccaccttgac 156  Q
    ||||||||||||| || | |||||||| |||||||||||||||||||||| || |||||||||||    
T  50167688 tgccacgatttttccaaacttcaacattaattttgagacacatttcaacatttctccaccttgac 50167752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 28266108 - 28266159
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaacaat 143  Q
    ||||| |||||||||| | ||| |||||||||||||||||||||||||||||    
T  28266108 tgccatgattttttcaaacttccacatcaattttgagacacatttcaacaat 28266159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 45644849 - 45644898
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaaca 141  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||||||    
T  45644849 tgccacgatttttccaggcttcaacttcaattttgagacacatttcaaca 45644898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 50167608 - 50167637
Alignment:
Q  13 ctcctgcatcgtgccacgatttttccagtg 42  Q
    ||||||||||||||||||||||||||||||    
T  50167608 ctcctgcatcgtgccacgatttttccagtg 50167637  T

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Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 4045144 - 4045012
Alignment:
Q  10 ttgctcctgcatcgtgccacgatttttccagtgaaaccttcctt-aagcacacctaaaatcgtgccactcttccatgcccacatgccacgattttttcag 108  Q
    |||||||||||||||||||| ||||||||||||| | | ||||  || |||||   |||||||| ||   | |||||| ||| ||||||||||| |||||    
T  4045144 ttgctcctgcatcgtgccacaatttttccagtgacagcctcctagaaacacactcgaaatcgtgtcaggat-ccatgctcacgtgccacgatttcttcag 4045046  T
Q  109 atttcaacatcaattttgagacacatttcaacaa 142  Q
    | ||||||||||||||||||||||||||||||||    
T  4045045 acttcaacatcaattttgagacacatttcaacaa 4045012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 3039456 - 3039505
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaaca 141  Q
    ||||||||||||  || | |||||||| ||||||||||||||||||||||    
T  3039456 tgccacgattttcccaaacttcaacataaattttgagacacatttcaaca 3039505  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 12098319 - 12098371
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaacaatt 144  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  12098319 tgccacgatttttccaaacttcaacatcaattttgagacacatttcaacaatt 12098371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 41317985 - 41318034
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaaca 141  Q
    ||||||||||||| || | |||||| ||||||||||||||||||||||||    
T  41317985 tgccacgatttttccaaacttcaacttcaattttgagacacatttcaaca 41318034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 24526439 - 24526486
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaa 139  Q
    ||||||||||||| || | |||||| ||||||||||||||||||||||    
T  24526439 tgccacgatttttccaaacttcaacttcaattttgagacacatttcaa 24526486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 52467854 - 52467905
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaacaat 143  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  52467854 tgccacgattgttttagacttcaacatcaattttgagacacatttcaacaat 52467905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 45687716 - 45687770
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaacaatttt 146  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||||| ||||    
T  45687716 tgccacgatttttccaaacttcaacatcaattttgagacacatttcaacagtttt 45687770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 46147860 - 46147910
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaacaa 142  Q
    ||||| ||||||| || | ||||||||||||||||||||||||||||||||    
T  46147860 tgccatgatttttccaaacttcaacatcaattttgagacacatttcaacaa 46147910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 36463922 - 36463972
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaacaa 142  Q
    |||||||||| || || | ||||| ||||||||||||||||||||||||||    
T  36463922 tgccacgattgttccaaacttcaatatcaattttgagacacatttcaacaa 36463972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 36773200 - 36773146
Alignment:
Q  89 acatgccacgattttttcagatttcaa-catcaattttgagacacatttcaacaa 142  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  36773200 acatgccacgattttttcaaacttcaaacatcaattttgagacacatttcaacaa 36773146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 33162946 - 33162999
Alignment:
Q  89 acatgccacgattttttcagatttcaacatcaattttgagacacatttcaacaa 142  Q
    |||||||||||||||| || | |||| |||||||||||||||||||||||||||    
T  33162946 acatgccacgatttttccaaacttcatcatcaattttgagacacatttcaacaa 33162999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 5688898 - 5688849
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaaca 141  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||||    
T  5688898 tgccacgatttttccaaacttcaacatcaattttgagacacatttcaaca 5688849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 30291261 - 30291216
Alignment:
Q  96 acgattttttcagatttcaacatcaattttgagacacatttcaaca 141  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||    
T  30291261 acgatttttccagacttcaacatcaattttgagacacatttcaaca 30291216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 18141468 - 18141421
Alignment:
Q  92 tgccacgattttttcagatttcaacatcaattttgagacacatttcaa 139  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||    
T  18141468 tgccacgattgttccagacttcaacatcaattttgagacacatttcaa 18141421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 40320736 - 40320686
Alignment:
Q  89 acatgccacgattttttcagatttcaacatcaattttgagacacatttcaa 139  Q
    |||||||||||||||| || | |||||| |||||||| |||||||||||||    
T  40320736 acatgccacgatttttccaaacttcaacttcaattttaagacacatttcaa 40320686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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