View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629-Insertion-4 (Length: 755)
Name: NF2629-Insertion-4
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 276 - 755
Target Start/End: Complemental strand, 39688968 - 39688459
Alignment:
| Q |
276 |
acacatttcactttcacatttatctcaatggttacatattggtatcattgtgcaataattaatcaaagatatgttattatctatacaggtgaagaatgta |
375 |
Q |
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| T |
39688968 |
acacatttcactttcacatttatctcaatggttacatattggtatcattgtgcaataattaatcaaagatatgttattatctacacaggtgaagaatgta |
39688869 |
T |
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| Q |
376 |
acactgttgttatcatagcatgga--------------------tcatcaattttgactttattgagagttcctaggacactagaacacaatacaaccta |
455 |
Q |
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| T |
39688868 |
acactgttgttatcatagcatggaatataaaattaggtcttgtatcatcaactttgactttattgagagctcctaggacactagaacacaatacaaccta |
39688769 |
T |
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| Q |
456 |
aaaaagcttcatcatattcacaagttatgtaaatcttaacactttttcattgtgaagttgatcgtaaatttgttaattttgttcatttgagcagcatatg |
555 |
Q |
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| T |
39688768 |
aaaaagcttcatcatattcacaagttatgtaaatcttaacactttttcattgtgaagttgatcgtaaatttgttaattttgttcatttgagcagcatatg |
39688669 |
T |
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| Q |
556 |
tttcttattcttatgaaattgcagctaggtagctagattcttcttgcacttatgaacttagttattttgaatgggaaatcc---tgctaatccataagca |
652 |
Q |
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| T |
39688668 |
tttcttattcttatgagattgcagctaggtagctagattcttcttgcacttatgaacttagttattttgaatgggaaatccttatgctaatccataagca |
39688569 |
T |
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| Q |
653 |
acggagtgatgtcaatgcaagaaacaacatgtggatgtgtcggtgcaagtatatagcagatcaaaaagaggc-------caactaacaatgttggtgggt |
745 |
Q |
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| T |
39688568 |
acggagtgatgtcaatgtaagaaacaacatgtggatgtgtcggtgcaagtatatagaagatcaaaaagaggccaactagcaactaacaatgttggtgggt |
39688469 |
T |
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| Q |
746 |
tgggttgaat |
755 |
Q |
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| T |
39688468 |
taggttgaat |
39688459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 39689299 - 39689029
Alignment:
| Q |
8 |
ctttctatttctttctcttggttgtttttaaaaatttgtaaaagtaaagtatattagtacttcccacctactggcctgcgtaggagcggttgtgtacttg |
107 |
Q |
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| T |
39689299 |
ctttctatttctttctcttggttgtttttaaaaatttgtaaaagtaaagtatattagtacttcccacctactggcctgcgtaggagcggttgtgtacttg |
39689200 |
T |
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| Q |
108 |
tgttgcaaacatagatgagggaaaggatttggtgagagtaaaaggaactaaatctaatggtaaaaaagtagaataaccaatcatggacaagcttaagtat |
207 |
Q |
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| T |
39689199 |
tgttgcaaacatagatgagggaaaggatttggtgagagtaaaaggaactaaatctaatggtaaaaaagtagaataatcaatcatggacaagtttaagtat |
39689100 |
T |
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| Q |
208 |
ggtctaggctaaatggcgcccttttagttaggaccgttaaaaccataggtattgttggaaaaatgccaaca |
278 |
Q |
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| T |
39689099 |
ggtctatgctaaatggcacccttttagttaggaccattaaaaccataggtattgttggaaaaatgccaaca |
39689029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 552 - 642
Target Start/End: Original strand, 30903004 - 30903094
Alignment:
| Q |
552 |
tatgtttcttattcttatgaaattgcagctaggtagctagattcttcttgcacttatgaacttagttattttgaatgggaaatcctgctaa |
642 |
Q |
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| T |
30903004 |
tatgtttcttattctcctgagattgcagctaggtaccttgattcatctagcagttattaacttggttattttgaattggagatcctgctaa |
30903094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 36065437 - 36065498
Alignment:
| Q |
547 |
cagcatatgtttcttattcttatgaaattgcagctaggtagctagattcttcttgcacttat |
608 |
Q |
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| T |
36065437 |
cagcttatgtttgttattctcctgaaacttcagctaagtacctagattcttcttgcacttat |
36065498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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