View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629-Insertion-5 (Length: 721)
Name: NF2629-Insertion-5
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629-Insertion-5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 186 - 721
Target Start/End: Complemental strand, 13829402 - 13828868
Alignment:
| Q |
186 |
cttgcaaatgtttgatgatgctatgctattaaggtgtagttgttgatgaatgatttgaattgtactatttgatctctttgcgaagnnnnnnnaatgtcat |
285 |
Q |
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| T |
13829402 |
cttgcaaatgtttgatgttgctatgctattaaggtgtagttattgatgaatgatttgaattgtactatttgatctctttgcgaagtttttttaatgtcat |
13829303 |
T |
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| Q |
286 |
ttctaattacttagggaaagccaatgacaacattgggtgatcaagtatgcaagatttgtggggaaaatattgggaagaaggttgatggtgaaccattcat |
385 |
Q |
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| T |
13829302 |
ttctaattacttagggaaagccaatgacaacattgggtgatcaagtatgcaagatttgtggggaaaatattgggaagacggttgatggtgaaccattcat |
13829203 |
T |
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| Q |
386 |
tgcatgtgatgcttgtgcttttcctgtttgtcggctttgctatgagtatgaaaggaaagatgggaagcaatcttgccttcagtgtaaaacccgatacaag |
485 |
Q |
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| T |
13829202 |
tgcatgtgatgcttgtgcttttcctgtttgtcggctttgctatgagtatgaaaggaaagatgggaagcaatcttgccttcagtgtaaaacccgatacaag |
13829103 |
T |
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| Q |
486 |
aagcataaaggtaaacggaaccttaaatgttttagtttaattttgatatacaccttagtttgtcagtgtaaaaagttttacgcagtcagcaaatcacata |
585 |
Q |
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| T |
13829102 |
aagcataaaggtaaacgaaaccttaaatgttttagtttaattttgatatacaccttagtttgtcagtgtaaaaagttttacgcagtcagcaaatcacata |
13829003 |
T |
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| Q |
586 |
caatggtatttgtgattttagaagtagttgtaattaaaacgtttttaacgatttaatagttatgattgattgatggtgtaaaaaatctttacagcggcag |
685 |
Q |
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| T |
13829002 |
caatggtatttgtgattttagaagtagttgtaattaaaacgtttttaacgatttaatagttatgattgattgatggtgta-aaaatctttacagcggcag |
13828904 |
T |
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| Q |
686 |
tgtatctgaattaaatccgaaacgtattatctgtca |
721 |
Q |
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| T |
13828903 |
tgtatctgaattaaatccgaaacgtattatctgtca |
13828868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 13829580 - 13829431
Alignment:
| Q |
8 |
cttatattggattgatatggcttcaaattatacagagaatagggagctgtttctgaagtgggagtgtatcaaaagtttaagtagagttcatcaccatgat |
107 |
Q |
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| T |
13829580 |
cttatattggattgatatggcttcaaattatacagagaatagggagctgtttctgaagtgggagtgtatcaaaagtttaagtagagttcatcaccatgat |
13829481 |
T |
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| Q |
108 |
ggagccagaaggggaagctggggtgagtaattattagtaaagcaagaatc |
157 |
Q |
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| T |
13829480 |
ggagccagaaggggaagctggggtgagtaattattagtaaagcaagaatc |
13829431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 701
Target Start/End: Original strand, 34742790 - 34742852
Alignment:
| Q |
639 |
taatagttatgattgattgatggtgtaaaaaatctttacagcggcagtgtatctgaattaaat |
701 |
Q |
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| T |
34742790 |
taatagttatgatggattgatggtgtaaaatatatttacattgacggtgtatatgaattaaat |
34742852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 366 - 498
Target Start/End: Complemental strand, 43440020 - 43439888
Alignment:
| Q |
366 |
gttgatggtgaaccattcattgcatgtgatgcttgtgcttttcctgtttgtcggctttgctatgagtatgaaaggaaagatgggaagcaatcttgccttc |
465 |
Q |
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| T |
43440020 |
gttgatggtgaaccgttcattgcatgcagtgtttgtgtttatcctgtttgtaggctttgctatgaggatgaaagggaagatgggaaacaatcttgtcctc |
43439921 |
T |
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| Q |
466 |
agtgtaaaacccgatacaagaagcataaaggta |
498 |
Q |
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| T |
43439920 |
agtgtaatacccgatacaagaggcataaaggta |
43439888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 614
Target Start/End: Original strand, 24547688 - 24547755
Alignment:
| Q |
547 |
gtcagtgtaaaaagttttacgcagtcagcaaatcacatacaatggtatttgtgattttagaagtagtt |
614 |
Q |
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| T |
24547688 |
gtcagtgtaaaaagttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagtt |
24547755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 700
Target Start/End: Original strand, 1815989 - 1816046
Alignment:
| Q |
643 |
agttatgattgattgatggtgtaaaaaatctttacagcggcagtgtatctgaattaaa |
700 |
Q |
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| T |
1815989 |
agttatgattgattgatggtgtaaaacatcattatatcggcgatgtatgtgaattaaa |
1816046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 398 - 500
Target Start/End: Original strand, 9475215 - 9475317
Alignment:
| Q |
398 |
ttgtgcttttcctgtttgtcggctttgctatgagtatgaaaggaaagatgggaagcaatcttgccttcagtgtaaaacccgatacaagaagcataaaggt |
497 |
Q |
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| T |
9475215 |
ttgtgccttccctgtttgtaggccgtgctatgagtatgaaaggaaagatgggaatcagtcttgcccacagtgcaaaactcgatacaataagcacaaaggt |
9475314 |
T |
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| Q |
498 |
aaa |
500 |
Q |
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| T |
9475315 |
aaa |
9475317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 703
Target Start/End: Original strand, 17213770 - 17213853
Alignment:
| Q |
620 |
taaaacgtttttaacgatttaatagttatgattgattgatggtgtaaaaaatctttacagcggcagtgtatctgaattaaatcc |
703 |
Q |
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| T |
17213770 |
taaaacgtttttaacgatttgacaattatgattgattgacagtataaactatctttacactgacaatgtatatgaattaaatcc |
17213853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 678
Target Start/End: Complemental strand, 39177873 - 39177839
Alignment:
| Q |
644 |
gttatgattgattgatggtgtaaaaaatctttaca |
678 |
Q |
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| T |
39177873 |
gttatgattgattgatggtgtaaaacatctttaca |
39177839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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