View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629-Insertion-6 (Length: 547)
Name: NF2629-Insertion-6
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 268 - 547
Target Start/End: Original strand, 41980577 - 41980854
Alignment:
| Q |
268 |
agcaagattataattacgaattataattatatacgtgtaggttatgagatttctccaacgtttggtgaattggaagaggaagcaagaaagaaagcatggg |
367 |
Q |
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| T |
41980577 |
agcaagattataattacgaattataattatatacgtgtaggttatgagatttctccaacgtttggtgaattggaagaggaagcaagaaagaaagcatggg |
41980676 |
T |
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| Q |
368 |
aagaaatgaactttatatgattgctatatatattgttcacattggttgtaattgatgatttcctccggtttcatttcttcttataagnnnnnnnagcgac |
467 |
Q |
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| T |
41980677 |
aagaaatgaactttatatgattgc--tatatattgttcacattggttgtaattgatgatttcctccggtttcatttcttcttataagtttttttagcgac |
41980774 |
T |
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| Q |
468 |
tttttagtaagttattatgaatgggaattgggagcaattggattctgtagaattttgggatattgtcctacatatcatga |
547 |
Q |
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| T |
41980775 |
tttttagtaagttattatgaatgggaattgggagcaattggattctgtagaattttgggatattgtcctacatatcatga |
41980854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 41980268 - 41980492
Alignment:
| Q |
8 |
gaagacgcattcaaggtattggatttaattagtctagaataacattttctattttctctttaatctgcagacagattataattctaaaatttttgactgt |
107 |
Q |
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| T |
41980268 |
gaagacgcattcaaggtattggatttaattagtctagaataacattttctattttctctttaatccgcagacagattataattctaaaatttttgaatgt |
41980367 |
T |
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| Q |
108 |
atttaggtgctgcgggagagcaatcgaggttgtggaatattggtttcatcagcgagaaaagatagcaatgctttatactctctccgagacacctctgagg |
207 |
Q |
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| T |
41980368 |
atttaggtgctgcgggagagcaatcgaggttgtggaatattggtttcatcagtgagaaaagatagcaatgctttatactctctccgagacacctctgagg |
41980467 |
T |
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| Q |
208 |
tttaaatcccaatactctttgcatg |
232 |
Q |
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| T |
41980468 |
tttaaatcccaatactctttgcatg |
41980492 |
T |
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