View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629R-Insertion-1 (Length: 1001)
Name: NF2629R-Insertion-1
Description: NF2629R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629R-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 798; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 9 - 992
Target Start/End: Original strand, 40652166 - 40653140
Alignment:
| Q |
9 |
atttgttcttgatccatttgggtactttagatctcgcgtacaatagaaaaaccattctaaatctcgtttcggtagaaatgatttctctgcatttcacacc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40652166 |
atttgttcttgatccatttgggtactttagatctcgtgtacaataaaaaaaccattctaaatctcgtttcggtagaaatgatttctctgcatttcacacc |
40652265 |
T |
|
| Q |
109 |
tcatgaattaggcttctcaaatttccttagcagaaataacgcagtaaaatttacataaaagattctgtttaacattagttgatataaattataaatgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40652266 |
tcatgaattaggcttctcaaatttccttagcagaaataacgcagtaaaatttacataaaagattctgtttaacattagttgatataaattataaatgatg |
40652365 |
T |
|
| Q |
209 |
tagtacgttaaaccttgcatttgaaatatattgttttttacatgcaagtgattaaaatgtgatattgaagattaccaggcaactcccatggaccaaattt |
308 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40652366 |
tagtacgttaaaccttacatttgaaatatattgttttttacatgcaagtgattaaaatgtgatattgaagattaccaggcaactcccatggatcaaattt |
40652465 |
T |
|
| Q |
309 |
gtaaaaatcaatcgttggaataacatcaagctcaatttcaagtccttccacttttcttttaagatagtatccaactagttcttcatcggttggatggaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40652466 |
gtaaaaatcaatcgttggaataacatcaagctcaatttcaagtccttccacttttcttttaagatagtatccaactagttcttcatcggttggatggaaa |
40652565 |
T |
|
| Q |
409 |
cgaaaacctggtggcaacgatgctccttccataatatgcttcagagtttcttactagaaataaccaaaaatagaagtaaccaaagtttcttgctgaaaat |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40652566 |
cgaaaacctggtggcaacgatgctccttccataatatgtttcagagtttcttactagaaataaccaaaaatagaagtaaccaaagtttcttgctgaaaat |
40652665 |
T |
|
| Q |
509 |
tgtgaaagaagtagccaaagctataggcaagagaacaaaaacaatagattaatgataattattactaagttgcaagacaatatctattaaagaaatggaa |
608 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40652666 |
tgtgaaacaagtagccaaagctataggcaagagaacaaaaacaatagattaatgataattattactaagttgcaagacaatatctattaaagaaatggaa |
40652765 |
T |
|
| Q |
609 |
gatccaaaaatagaagcttttgtctacaatagatttttgttcaagagtcaagtgacacttccacaaagtgcatccattgaatgcaaggatcatggtcttg |
708 |
Q |
| |
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| T |
40652766 |
gatccaaaaatagaagcttttctctacaatagatttttgttcaagagtcaagtgacacttccacaaagtgcatccattgaatgcaaggatcatggtcttg |
40652865 |
T |
|
| Q |
709 |
--nnnnnnnnntagatgtgtcttgtggcaacaatttcacccctaaccccaccttattcccttaatactaagttccttaaaagctggagcagaagagaatg |
806 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
40652866 |
aaaaaaaaaaatagatgtgttttgtggcaacaatttcacccctaaccccaccttattcccttaatattaagttcct------------------agaatg |
40652947 |
T |
|
| Q |
807 |
aaattaatttatcaactatactccaaagttacaaaactaccaacttttgtaacttaaaattatgtat-aaataaaaaatgataacaacttaaaattttat |
905 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
40652948 |
aaattaatttatcaactatactccaaagttacaaaactaccaacttttgtaacttcaaattatgtttaaaataaaaaatgataacaacttaaaattttat |
40653047 |
T |
|
| Q |
906 |
cacaaggtt--caaaaagggac--tagagtaaaagtataagtcattgatcgtgtgctatttatagca-ttggaagtgaatc-aaactatagtc |
992 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
40653048 |
cacaaggtttcaaaaaagggactatagagtaaaagtataagtcattgatagtgtgctatttatagcatttggaagtgaatcaaaactatagtc |
40653140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 249 - 416
Target Start/End: Complemental strand, 4776289 - 4776118
Alignment:
| Q |
249 |
catgcaagtgattaaaatgtgatattgaagat----taccaggcaactcccatggaccaaatttgtaaaaatcaatcgttggaataacatcaagctcaat |
344 |
Q |
| |
|
||||||| |||| || |||||| ||||||||| ||||||| || ||||| ||| |||||||||| |||||||| || ||||| ||||||||||| |
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| T |
4776289 |
catgcaaatgatcaacatgtgaaattgaagatgacctaccaggtaattcccaaggatcaaatttgtagaaatcaataacaggtataacttcaagctcaat |
4776190 |
T |
|
| Q |
345 |
ttcaagtccttccacttttcttttaagatagtatccaactagttcttcatcggttggatggaaacgaaaacc |
416 |
Q |
| |
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|||||| ||||| ||||||||||| || || ||||| | | ||||||||||||||||||||||||||||| |
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| T |
4776189 |
ttcaagcccttcaacttttctttttaggtaatatcctatcaactcttcatcggttggatggaaacgaaaacc |
4776118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 4777020 - 4776930
Alignment:
| Q |
9 |
atttgttcttgatccatttgggtactttagatctcgcgtacaatagaaaaaccattctaaatctcgtttcggtagaaatgatttctctgca |
99 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||| |||| ||| ||||||||||||| | |||| ||| ||||| || |||||||||||| |
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|
| T |
4777020 |
atttgtccttgaaccatttgggtacttgcgatcccgcggacagaagaaaaaccattccatgtctctttttggtaggaaagatttctctgca |
4776930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 380 - 425
Target Start/End: Complemental strand, 48098 - 48053
Alignment:
| Q |
380 |
caactagttcttcatcggttggatggaaacgaaaacctggtggcaa |
425 |
Q |
| |
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|||| ||||||||||| |||||||| ||||| |||||||||||||| |
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| T |
48098 |
caacaagttcttcatcagttggatgaaaacggaaacctggtggcaa |
48053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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