View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629R-Insertion-4 (Length: 535)
Name: NF2629R-Insertion-4
Description: NF2629R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629R-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 30250849 - 30250714
Alignment:
| Q |
9 |
aaaatttcatgaattattttaaacaattcaattaaccaaaccttactagaagaacctatcatatttaaactgattcacaaaaaacannnnnnnnnnnatt |
108 |
Q |
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| T |
30250849 |
aaaatttcatgaattattttaaacaattcaattaaccaaaccttactagaagaacctatcatatttaaactgattcagaaaaaata--tttttttttatt |
30250752 |
T |
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| Q |
109 |
catagttaaccaaaaacagaaaaataaacgaaaatcat |
146 |
Q |
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| T |
30250751 |
catagttaaccaaaaacagaaaaataaacgaaaatcat |
30250714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 30250663 - 30250572
Alignment:
| Q |
198 |
aaaagttactgggattgattatcataacttttaaagttgtgatttgtttcctttaaatccaacatttgcaacgatcttgataactcttaaaa |
289 |
Q |
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| T |
30250663 |
aaaagttactgggattgattatcataacttttaaagttgtgatttgtttcccttaaatccaacatttgcaacgatctcgataactctcaaaa |
30250572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 478 - 535
Target Start/End: Complemental strand, 30250055 - 30249998
Alignment:
| Q |
478 |
acacagccaacaataacaacaataaaaatgaaaattctctttcaagagttatttcttc |
535 |
Q |
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| T |
30250055 |
acacagccaacaataacaacaataaaaatgaaaattgtccttcaagagttatttcttc |
30249998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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