View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629R-Insertion-6 (Length: 317)
Name: NF2629R-Insertion-6
Description: NF2629R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629R-Insertion-6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 26735796 - 26736104
Alignment:
| Q |
9 |
ggatatgtttcaaacaaggatacaaatttgttgttgtatgagtacatgcctaatggtagtttaggtgagtggcttcatggtgcaaaaggttgtcatttga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26735796 |
ggatatgtttcaaacaaggatacaaatttgttgttgtatgagtacatgcctaatggtagtttaggtgagtggcttcatggtgcaaaaggttgtcatttga |
26735895 |
T |
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| Q |
109 |
gttgggaaatgaggtacaaaattgctgtggaagctgctaagggactttgctatttgcaccatgattgttcacctcttatcattcatagggatgttaagtc |
208 |
Q |
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| T |
26735896 |
gttgggaaatgaggtacaaaattgctgtggaagctgctaagggactttgctatttgcaccatgattgttcacctcttatcattcatagggatgttaagtc |
26735995 |
T |
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| Q |
209 |
taataatatattgcttgatgctgattttgaggctcatgttgctgattttggacttgctaagttcttgtatgatccaggtgcttctcaatccatgtcctct |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26735996 |
taataatatattgcttgatgctgattttgaggctcatgttgctgattttggacttgctaagttcttgtatgatccaggtgcttctcaatccatgtcctca |
26736095 |
T |
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| Q |
309 |
attgctggc |
317 |
Q |
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||||||||| |
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| T |
26736096 |
attgctggc |
26736104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 316
Target Start/End: Complemental strand, 40404196 - 40403925
Alignment:
| Q |
45 |
tatgagtacatgcctaatggtagtttaggtgagtggcttcatggtgcaaaaggttgtcatttgagttgggaaatgaggtacaaaattgctgtggaagctg |
144 |
Q |
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| T |
40404196 |
tatgagtacatgcctaatggaagtttaggcgaagttcttcatggtaagaaaggtggtcatttgcattgggatacaaggtacaaaattgctgtggaagctg |
40404097 |
T |
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| Q |
145 |
ctaagggactttgctatttgcaccatgattgttcacctcttatcattcatagggatgttaagtctaataatatattgcttgatgctgattttgaggctca |
244 |
Q |
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| T |
40404096 |
caaagggtctttgttatctacatcatgactgttcacctctaattgttcatcgtgatgtgaaatcaaacaatatcttgcttgattcaggctttgaagccca |
40403997 |
T |
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| Q |
245 |
tgttgctgattttggacttgctaagttcttgtatgatccaggtgcttctcaatccatgtcctctattgctgg |
316 |
Q |
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| T |
40403996 |
tgttgctgattttggacttgctaagttcttgcaagattctggaacttctgaatgcatgtctgctattgctgg |
40403925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 12062722 - 12062641
Alignment:
| Q |
119 |
gaggtacaaaattgctgtggaagctgctaagggactttgctatttgcaccatgattgttcacctcttatcattcatagggat |
200 |
Q |
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|||||| ||||||||| ||| || ||| || ||| |||||||||||||||||||||||||||| | | | |||||||||||| |
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| T |
12062722 |
gaggtataaaattgctttgggaggtgcaaaaggaatttgctatttgcaccatgattgttcaccacctgttattcatagggat |
12062641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 126 - 275
Target Start/End: Original strand, 16735155 - 16735304
Alignment:
| Q |
126 |
aaaattgctgtggaagctgctaagggactttgctatttgcaccatgattgttcacctcttatcattcatagggatgttaagtctaataatatattgcttg |
225 |
Q |
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||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||| | |
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| T |
16735155 |
aaaattgctgttgaagctgctaaaggactttgttatttgcatcatgattgttcacctttgatcattcatagagatgttaagtcaaataatatattgttga |
16735254 |
T |
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| Q |
226 |
atgctgattttgaggctcatgttgctgattttggacttgctaagttcttg |
275 |
Q |
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| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16735255 |
actctgaatttgaggctcatgttgctgattttggacttgctaagttcttg |
16735304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 138 - 275
Target Start/End: Complemental strand, 39226058 - 39225921
Alignment:
| Q |
138 |
gaagctgctaagggactttgctatttgcaccatgattgttcacctcttatcattcatagggatgttaagtctaataatatattgcttgatgctgattttg |
237 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||| | || ||||||| ||||||||||| ||||| |||||| | | |||| |||| |
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| T |
39226058 |
gaagctgctaaaggactttgctatttgcaccatgattgttgtcctttgattgttcatagagatgttaagtcaaataacatattgttgaactctgagtttg |
39225959 |
T |
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| Q |
238 |
aggctcatgttgctgattttggacttgctaagttcttg |
275 |
Q |
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| T |
39225958 |
aggctcatgttgctgattttggacttgctaagttcttg |
39225921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 275
Target Start/End: Original strand, 4979115 - 4979345
Alignment:
| Q |
45 |
tatgagtacatgcctaatggtagtttaggtgagtggcttcatggtgcaaaaggttgtcatttgagttgggaaatgaggtacaaaattgctgtggaagctg |
144 |
Q |
| |
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|||||||||||||||||||| |||||||| || || ||||| ||||| |||||||| |||||| | ||||| |||||||||||||| |||| |
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| T |
4979115 |
tatgagtacatgcctaatggaagtttaggcgaagttctccatggaaagaaaggcggtcatttgtattgggatacaaggtataaaattgctgtggaggctg |
4979214 |
T |
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| Q |
145 |
ctaagggactttgctatttgcaccatgattgttcacctcttatcattcatagggatgttaagtctaataatatattgcttgatgctgattttgaggctca |
244 |
Q |
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| T |
4979215 |
caaagggactttgctatctacaccatgattgttccccgcttattgttcatcgagatgtgaaatcaaacaacatccttcttgattctaattatgaagccca |
4979314 |
T |
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| Q |
245 |
tgttgctgattttggacttgctaagttcttg |
275 |
Q |
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| T |
4979315 |
tgttgctgattttggacttgccaagttcttg |
4979345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 4999350 - 4999429
Alignment:
| Q |
190 |
ttcatagggatgttaagtctaataatatattgcttgatgctgattttgaggctcatgttgctgattttggacttgctaag |
269 |
Q |
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||||||||||||| ||| |||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||||| |
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| T |
4999350 |
ttcatagggatgtgaagagtaataacatattgcttgatcatgattttgttcctcgtgttgctgattttggacttgctaag |
4999429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 38868260 - 38868362
Alignment:
| Q |
126 |
aaaattgctgtggaagctgctaagggactttgctatttgcaccatgattgttcacctcttatcattcatagggatgttaagtctaataatatattgcttg |
225 |
Q |
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||||||||||| || |||||| ||||||||| |||||||||||||||||| || ||| ||||||||||||| || |||| |||||||||||| | |
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| T |
38868260 |
aaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgtgttgttcctattgttcatagggatgtaaaatctagtaatatattgctag |
38868359 |
T |
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| Q |
226 |
atg |
228 |
Q |
| |
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||| |
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| T |
38868360 |
atg |
38868362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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