View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629_low_1 (Length: 340)
Name: NF2629_low_1
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 41003266 - 41003596
Alignment:
| Q |
1 |
tcattgatttggcatgtatggcctgcatgtatgtttagcttgaatttttaagcaacattttctgctatatatcaatataaaatttgcaatatatattaag |
100 |
Q |
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| T |
41003266 |
tcattgatttggcatgtatggcctgcatgtatgtttagcttgaatttttaagcaacattttctgctatatatcaatataaaatttgcaatatatattaag |
41003365 |
T |
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| Q |
101 |
aaagcttaaataaatactttgagggtaagtatatactatgtgaatgaatatcacttaaattagtaagaggaaattggagagggatttcatttttcatgtg |
200 |
Q |
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| T |
41003366 |
aaagcttaaataaatactttgagggtaagtatatactatgtgaatgaatatcacttaaattagtaagaggaaattggagagggatttcatttttcatgtg |
41003465 |
T |
|
| Q |
201 |
tcacatatttttgtccctaattttaccttgtttaatagtgatattagatatttattaggattagaaaaataagattagatattagtgtacctgtgcttgg |
300 |
Q |
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| T |
41003466 |
tcacatatttttgtccctaattttaccttgtttaatagtgatattagatatttattagaattagaaaaataagattagatattagtgtacctgtgcttgg |
41003565 |
T |
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| Q |
301 |
gaattgttggcatagctggcctctcctttgc |
331 |
Q |
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| T |
41003566 |
gaattgttggcatagctggcctctcctttgc |
41003596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 118 - 331
Target Start/End: Original strand, 20855686 - 20855899
Alignment:
| Q |
118 |
tttgagggtaagtatatactatgtgaatgaatatcacttaaattagtaagaggaaattggagagggatttcatttttcatgtgtcacatatttttgtccc |
217 |
Q |
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| T |
20855686 |
tttgagggtatgtatatactatgtaaatgaatatcacttaaattagtaagaggaaattggagagggatttcatttttcatgtgtcacatatttttgtccc |
20855785 |
T |
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| Q |
218 |
taattttaccttgtttaatagtgatattagatatttattaggattagaaaaataagattagatattagtgtacctgtgcttgggaattgttggcatagct |
317 |
Q |
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| T |
20855786 |
aaattttaccttgtttaatagtgatattagatatttattagaattagaaaaataagattagatattagtgtacctgtgcttgggaattgttggcatagct |
20855885 |
T |
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| Q |
318 |
ggcctctcctttgc |
331 |
Q |
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| T |
20855886 |
ggcctctcctttgc |
20855899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 20855600 - 20855689
Alignment:
| Q |
1 |
tcattgatttggcatgtatggcctgcatgtatgttta----gcttgaatttttaagcaacattttctgctatatatcaatataaaatttg |
86 |
Q |
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| T |
20855600 |
tcattgatttggcatgtatggcctgcatgtatgtttaattagcttgaatttttaagcaacattttctgctatatatcaatataaaatttg |
20855689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 21558946 - 21558988
Alignment:
| Q |
287 |
gtacctgtgcttgggaattgttggcatagctggcctctccttt |
329 |
Q |
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| T |
21558946 |
gtacctgtgcttgggaattgttggcatagctagcctctccttt |
21558988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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