View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629_low_13 (Length: 304)
Name: NF2629_low_13
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 8163498 - 8163293
Alignment:
| Q |
1 |
gtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggacgcatctttgannnnnnncatcctatcttctgtctcttttgttga |
100 |
Q |
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| T |
8163498 |
gtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggactcatctttgatttttt-catcctaccttttgtctcttttgttga |
8163400 |
T |
|
| Q |
101 |
gctctttatataatttctatacttctgcaaaacaacattg-aagttacaatgttaataataatactccataagtttcagtttaaaatcacacaaaacaca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
8163399 |
gctctttatataatttctatacttctgcaaaacaacattgaaagtgacaatgttaataataatactccataaatttcagtttaaaatcacacaaaacgca |
8163300 |
T |
|
| Q |
200 |
agtagta |
206 |
Q |
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||||||| |
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| T |
8163299 |
agtagta |
8163293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 7316445 - 7316642
Alignment:
| Q |
1 |
gtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggacgcatctttgannnnnnncatcctatcttctgtctcttttgttga |
100 |
Q |
| |
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|||||||||||| | |||||||||| ||||||||||||| | || |||||||||| | ||||| | ||||||| ||| ||| |||| ||||| |
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| T |
7316445 |
gtcctgctccggcagtgagtgagtagcttctaagctaaattttgtctcaaaaggactcttcttttatttttt-catcctaccttttgtatcttcagttga |
7316543 |
T |
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| Q |
101 |
gctctttatataatttctatacttctgcaaaacaacattgaagttacaatgttaataataata----ctccataagtttcagtttaaaatcacacaaaa |
195 |
Q |
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| T |
7316544 |
gctctttaaataatttctatacttctgcaaaacaatattgcagttacaatgttaataataatactagctccataaatttcagtttaaaatcacacaaaa |
7316642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 7219602 - 7219405
Alignment:
| Q |
1 |
gtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggacgcatctttgannnnnnncatcctatcttctgtctcttttgttga |
100 |
Q |
| |
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|||||||||||| | |||||||||| ||||||||||||| | || |||||||||| | ||||| | ||||||| ||| ||| |||| ||||| |
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| T |
7219602 |
gtcctgctccggcagtgagtgagtagcttctaagctaaattttgtctcaaaaggactcttcttt-aattttttcatcctaccttttgtatcttcagttga |
7219504 |
T |
|
| Q |
101 |
gctctttatataatttctatacttctgcaaaacaacattgaagttacaatgttaataataata----ctccataagtttcagtttaaaatcacacaaaa |
195 |
Q |
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|||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
7219503 |
gctctttaaataatttctatacttctgcaaaacaatatagcagttacaatgttaataataatactagctccataaatttcagtttaaaatcacacaaaa |
7219405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 7323558 - 7323612
Alignment:
| Q |
152 |
ttaataataatactccataagtttcagtttaaaatcacacaaaacacaagtagta |
206 |
Q |
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|||| |||||||||||| |||||||| ||| ||||||||||||||||| |||||| |
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| T |
7323558 |
ttaacaataatactccacaagtttcaatttcaaatcacacaaaacacatgtagta |
7323612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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