View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629_low_18 (Length: 273)
Name: NF2629_low_18
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 40652397 - 40652166
Alignment:
| Q |
13 |
aatatatttcaaatgtaaggtttaacgtactacatcatttataatttatatcaactaatgttaaacagaatcttttatgtaaattttactgcgttatttc |
112 |
Q |
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| T |
40652397 |
aatatatttcaaatgtaaggtttaacgtactacatcatttataatttatatcaactaatgttaaacagaatcttttatgtaaattttactgcgttatttc |
40652298 |
T |
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| Q |
113 |
tgctaaggaaatttgagaagcctaattcatgaggtgtgaaatgcagagaaatcatttctaccgaaacgagatttagaatggtttttctattgtacgcgag |
212 |
Q |
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| T |
40652297 |
tgctaaggaaatttgagaagcctaattcatgaggtgtgaaatgcagagaaatcatttctaccgaaacgagatttagaatggtttttttattgtacacgag |
40652198 |
T |
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| Q |
213 |
atctaaagtacccaaatggatcaagaacaaat |
244 |
Q |
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| T |
40652197 |
atctaaagtacccaaatggatcaagaacaaat |
40652166 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 4776930 - 4777020
Alignment:
| Q |
154 |
tgcagagaaatcatttctaccgaaacgagatttagaatggtttttctattgtacgcgagatctaaagtacccaaatggatcaagaacaaat |
244 |
Q |
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| T |
4776930 |
tgcagagaaatctttcctaccaaaaagagacatggaatggtttttcttctgtccgcgggatcgcaagtacccaaatggttcaaggacaaat |
4777020 |
T |
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