View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2629_low_3 (Length: 239)
Name: NF2629_low_3
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629_low_3 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 20855382 - 20855612
Alignment:
| Q |
18 |
attgctaggaagatcagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttattgatgtgatttatgatcacattcaccaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20855382 |
attgctaggaagatcagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttaatgatgtgatttatgatcacattcaccaca |
20855481 |
T |
|
| Q |
118 |
ttaatggtgttgcttccacatgaacaccccaaatcagcaactacaaaagccttgt---------caccatcaccaccaccaagcttaactttatctaggg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20855482 |
ttaatggtgttgcttccacatgaacaccccaaatcagcaactacaaaagccttgtcgccatcaccaccaccaccaccaccaagcttaactttatctaggg |
20855581 |
T |
|
| Q |
209 |
tttctctcaaaaagtgaatcattgatttggc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
20855582 |
tttctctcaaaaagtgaatcattgatttggc |
20855612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 21558219 - 21558353
Alignment:
| Q |
18 |
attgctaggaagatcagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttattgatgtgatttatgatcacattcaccaca |
117 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||||||||| | ||||| || ||||| || || ||||||| || ||||| |||| || ||| |
|
|
| T |
21558219 |
attgctaggaagatcagagaagaaagcagaaaattcaggtgggttgaaccctaatgcttcatagcgtttgatgatgtgtttgatgattacatcaacaaca |
21558318 |
T |
|
| Q |
118 |
ttaatggtgttgcttccacatgaacaccccaaatc |
152 |
Q |
| |
|
|| || ||||| || ||||||||||| |||||||| |
|
|
| T |
21558319 |
ttgattgtgttactcccacatgaacaacccaaatc |
21558353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 41003042 - 41003278
Alignment:
| Q |
18 |
attgctaggaagatcagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttattgatgtgatttatgatcacattcaccaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41003042 |
attgctaggaagatcagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttattgatgtgatttatgatcacattcaccaca |
41003141 |
T |
|
| Q |
118 |
ttaatggtgttgcttccacatgaacaccccaaatcagcaactacaaaagccttgt---------------caccatcaccaccaccaagcttaactttat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
41003142 |
ttaatggtgttgcttccacatgaacaccccaaatcagcaactacaaaagccttgtcaccaccaccaccaccaccaccaccaccaccaagcttaactttat |
41003241 |
T |
|
| Q |
203 |
ctagggtttctctcaaaaagtgaatcattgatttggc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41003242 |
ctagggtttctctcaaaaagtgaatcattgatttggc |
41003278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University