View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2629_low_9 (Length: 323)
Name: NF2629_low_9
Description: NF2629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2629_low_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 102 - 323
Target Start/End: Complemental strand, 25885820 - 25885599
Alignment:
| Q |
102 |
atttagagcagaaaaaatgtcagaaaattttataaacaattggccaaaaccagaggaaaatagtaagcatccagttatagtagccttatttaggtgtttt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885820 |
atttagagcagaaaaaatgtcagaaaattttataaacaattggccaaaaccagaggaaaatagtaagcatccagttatagtagccttatttaggtgtttt |
25885721 |
T |
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| Q |
202 |
tggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttgatttcacatcaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885720 |
tggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttgatttcacatcaa |
25885621 |
T |
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| Q |
302 |
ggaaagatagcactactagtga |
323 |
Q |
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|||||||||| ||||||||||| |
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| T |
25885620 |
ggaaagatagtactactagtga |
25885599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 102 - 323
Target Start/End: Complemental strand, 44349664 - 44349443
Alignment:
| Q |
102 |
atttagagcagaaaaaatgtcagaaaattttataaacaattggccaaaaccagaggaaaatagtaagcatccagttatagtagccttatttaggtgtttt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
44349664 |
atttagagcagaaaaaatgtcagaaaattttataaacaattggccaaaaccagaggaaaacagtaagcatccagttatggtagccttatttaggtgtttt |
44349565 |
T |
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| Q |
202 |
tggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttgatttcacatcaa |
301 |
Q |
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| T |
44349564 |
tggaaacacatagctatcactggcttccttgcagtgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttgattttacatcaa |
44349465 |
T |
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| Q |
302 |
ggaaagatagcactactagtga |
323 |
Q |
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| T |
44349464 |
ggaaagatagtactactagtga |
44349443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 103 - 309
Target Start/End: Complemental strand, 14282988 - 14282782
Alignment:
| Q |
103 |
tttagagcagaaaaaatgtcagaaaattttataaacaattggccaaaaccagaggaaaatagtaagcatccagttatagtagccttatttaggtgttttt |
202 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||| |
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| T |
14282988 |
tttagagcagaaaaaatgtcagaactttttcaaaacaattggccaaaaccagaggaaaatagtaagcatccagttggagttaccctttttaggtgttttt |
14282889 |
T |
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| Q |
203 |
ggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttgatttcacatcaag |
302 |
Q |
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| T |
14282888 |
ggaaacacatagcttttacgggcttccttgcaatcattaagctttgtgttatgtatgttggtcccttgttgattgagagttttgttgatttcacatcaag |
14282789 |
T |
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| Q |
303 |
gaaagat |
309 |
Q |
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||||||| |
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| T |
14282788 |
gaaagat |
14282782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 103 - 323
Target Start/End: Complemental strand, 14321137 - 14320917
Alignment:
| Q |
103 |
tttagagcagaaaaaatgtcagaaaattttataaacaattggccaaaaccagaggaaaatagtaagcatccagttatagtagccttatttaggtgttttt |
202 |
Q |
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|||||||||||||||||||| ||| |||| || |||||||||||||||||||||||| ||||||||||||||| ||| || | ||||||||||||| |
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| T |
14321137 |
tttagagcagaaaaaatgtctgaactttttcaaagcaattggccaaaaccagaggaaaacagtaagcatccagttggagttaccctttttaggtgttttt |
14321038 |
T |
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| Q |
203 |
ggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttgatttcacatcaag |
302 |
Q |
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||||||| ||||||||||| |||||| ||||| | ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
14321037 |
ggaaacaaatagctttcacgggcttcattgcagtcattaggctttgtgttatgtatgttggtcccttgttgattcaaagttttgttgatttcacatcaag |
14320938 |
T |
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| Q |
303 |
gaaagatagcactactagtga |
323 |
Q |
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||||||||| || |||||||| |
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| T |
14320937 |
gaaagatagtacgactagtga |
14320917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 103 - 311
Target Start/End: Complemental strand, 14304746 - 14304538
Alignment:
| Q |
103 |
tttagagcagaaaaaatgtcagaaaattttataaacaattggccaaaaccagaggaaaatagtaagcatccagttatagtagccttatttaggtgttttt |
202 |
Q |
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|||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||| ||||||||||||||| ||| || | ||||||||||||| |
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| T |
14304746 |
tttagagcagaaaaaatgtctgaactttttcaaaacaattggccgaaaccagaggaaaacagtaagcatccagttggagttaccctttttaggtgttttt |
14304647 |
T |
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| Q |
203 |
ggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttgatttcacatcaag |
302 |
Q |
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|||||||||||| |||||||||||| |||||| | || |||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||| |
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| T |
14304646 |
ggaaacacatagttttcactggctttcttgcattcatgaggctttgtgttatgtatgtcggtccattgctgattcagagttttgttgatttcacatcaca |
14304547 |
T |
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| Q |
303 |
gaaagatag |
311 |
Q |
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||||||||| |
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| T |
14304546 |
gaaagatag |
14304538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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