View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2630_high_1 (Length: 652)
Name: NF2630_high_1
Description: NF2630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2630_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 27681738 - 27681314
Alignment:
| Q |
18 |
aagattgatggcacacctgatactggtgcaacacaacaaatggtgcacaatattatggagtatatggaaaagtagcaactttcagttgtgggaaaatatg |
117 |
Q |
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| T |
27681738 |
aagattgatggcacaccttatactggtgcaacacaacaaatggtgcacaatattatggagtatatggaaaagtagcaactttcagttgtgggaaaatatg |
27681639 |
T |
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| Q |
118 |
gaggagaatcctgcaaatgttattcattctaagctaattgaaggaagcaaatcgaagggaggtaattgtgcagaaacgcgatgatcggtagtacaaacca |
217 |
Q |
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| T |
27681638 |
gaggagaatcctgcaaatgttattcattctaagctaattgaaggaagcaaatcgaagggaggtaattgtgcagaaacgcgatgatcggtagcacaaacca |
27681539 |
T |
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| Q |
218 |
cctcataggaaactgaagtgtattgttataatgcttcattttccagtgaaggtgtatgcgtcatctttatcatggcaaaagttgctaaattcaagtcaca |
317 |
Q |
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| T |
27681538 |
cctcataggaaactgaagtgtattgt--taatgcttcattttccagtgaaggtgtatgcgtcatctttatcgtggcaaaagttgctaaattcaagtcaca |
27681441 |
T |
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| Q |
318 |
acttcatgttgctgaaggtgaggtatatgatttgctacaatctactttggattcaagaactaggactacatcatacat-aatcattaagcttgattccaa |
416 |
Q |
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| T |
27681440 |
acttcatgttgctgaaggtgaggtatatgatttgctacaatctactttggattcaagaactaggactacatcatacataaatcattaagcttgattccaa |
27681341 |
T |
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| Q |
417 |
aatagtagtagatcactttcattcaca |
443 |
Q |
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| T |
27681340 |
aatagtagtagatcactttcattcaca |
27681314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 476 - 637
Target Start/End: Complemental strand, 27681289 - 27681128
Alignment:
| Q |
476 |
gcctaagaatttattttgtccaaattggatggtagagtacactaggagaaaaactaatgtagtcacccataaactaacatacacatctaatcctctagtt |
575 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27681289 |
gcctaagaatttattttgttcaaattggatggtagagtacaccaggagaaaaactaatgtagtcacccataaactaacatatacatctaatcctctagtt |
27681190 |
T |
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| Q |
576 |
ttgagttcattccaatttgcactcaagacnnnnnnnnataggcaaatgaaatatgacaatgg |
637 |
Q |
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| T |
27681189 |
ttgagttcattccaatttgtactcaagacttttttttataggtaaatgaaatatgacaatgg |
27681128 |
T |
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