View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2630_low_2 (Length: 493)
Name: NF2630_low_2
Description: NF2630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2630_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 23344301 - 23343819
Alignment:
| Q |
1 |
tgttcatatgtgtgccatctgtcataagatagcctaattaacatgtatatagcatagtatatgtctttctgaaagggatttgatgcagtaactgtttctg |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23344301 |
tgttcatatgtgtaccatctgtcataagatagcctaattaacatgtatatagcatagtatatgtctttctgaaagggatttgatgcggtaactgtttctg |
23344202 |
T |
|
| Q |
101 |
cagtttttcagtcttgaccgtccgatctaaaccgatgaagatcgtttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaacggt |
200 |
Q |
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| T |
23344201 |
cagtttttcagtcttgaccgtccgatctaaaccgatgaagatcgtttaaacttgattttgttattgtgtaatctgaattgtccgatctcaaattaacggt |
23344102 |
T |
|
| Q |
201 |
caagattgtttactgcatgtaaatatgtgtttctccttaagcatggctgtaataaatctcaagagtaattgttatctatgtttgtgcttttactttaaag |
300 |
Q |
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| T |
23344101 |
caagattttttactgcatgtaaatatgtgtttctctttaagcatggctgtaataaatctcaagagtaattgttatctatgtttgtgcttttactttaaag |
23344002 |
T |
|
| Q |
301 |
aaatgttccaatatagaaatgatatgtttttatatgaatgtaaaatatcaagcacttgttctaatttgtttcaatctgatttggatacctatcattatag |
400 |
Q |
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| T |
23344001 |
aaatgttccaatatagaaatgatatgtttttatatgaatgtaaaatatcaagcacttgttctaatttgtttcaatctgatttggatacctatcattatag |
23343902 |
T |
|
| Q |
401 |
cacttaatttcatattttatcagcagccactagttaatggttgaataatctatacataaaactttccaatcagaatagaataa |
483 |
Q |
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| T |
23343901 |
cacttaatttcatattttatcagcagccactagttaatggttgaataatctatacataaaactttccaatcagaatagaataa |
23343819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 10585750 - 10585699
Alignment:
| Q |
145 |
tttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaa |
196 |
Q |
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|||||| || |||||||||||||||||||||| ||||||||||||||||| |
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| T |
10585750 |
tttaaattttattttgttattgtgtaatctgagccatccgatctcaaattaa |
10585699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 23713503 - 23713456
Alignment:
| Q |
153 |
tgattttgttattgtgtaatctgaattatccgatctcaaattaacggt |
200 |
Q |
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| T |
23713503 |
tgattttgttattgtgtaatctgaactgtccaatctcagattaacggt |
23713456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 32614342 - 32614399
Alignment:
| Q |
139 |
agatcgtttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaa |
196 |
Q |
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| T |
32614342 |
agatcgtttaaagttgattttgttattgtgtaatttgatttgtccgatgtcaaattaa |
32614399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 20770239 - 20770280
Alignment:
| Q |
153 |
tgattttgttattgtgtaatctgaattatccgatctcaaatt |
194 |
Q |
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| T |
20770239 |
tgattttgttattgggtaatctgaatcgtccgatctcaaatt |
20770280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 30241591 - 30241519
Alignment:
| Q |
139 |
agatcgtttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaacggtcaagattgttta |
212 |
Q |
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| T |
30241591 |
agatcgtttaaagttg-ttttgttattgtgtaatctgagatgtctgatttcagattaatggtcaagatcgttta |
30241519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 31681975 - 31682027
Alignment:
| Q |
185 |
atctcaaattaacggtcaagattgtttactgcatgtaaatatgtgtttctcct |
237 |
Q |
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||||||||||||| ||||| |||||||| |||||||||| |||| ||| |||| |
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| T |
31681975 |
atctcaaattaactgtcaatattgtttaatgcatgtaaagatgtctttttcct |
31682027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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