View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2630_low_3 (Length: 443)
Name: NF2630_low_3
Description: NF2630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2630_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 29 - 430
Target Start/End: Complemental strand, 45242503 - 45242100
Alignment:
| Q |
29 |
atttgactatgttacatgaagtgtacttttggtttgttttattgttgaaatctcttaacaacacacctagtttctgtacatattgtacgtcactacgccc |
128 |
Q |
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| T |
45242503 |
atttgactatgttacatgaagtgtatttttggtttgttttattgttgaaatctcttaacaacacacctagtttctgtacatattgtacgtcactacgccc |
45242404 |
T |
|
| Q |
129 |
tatctacattctccttatcgctgaaaacccatttgctgtctgtgggttttctaaaaggaatgaatgactaagtattattttcaaattctgcttgcatggc |
228 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242403 |
catctacattctccttatccctgaaaacccatttgttgtctgtgggttttctaaaaggaatgaatgactaagtattattttcaaattctgcttgcatggc |
45242304 |
T |
|
| Q |
229 |
ttgaaagttgaaaccactcaggactctgcaactgctatttcataaattttggttcaacctgtgttagttgtacggtagtgttgtttgggtttaatatatc |
328 |
Q |
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| T |
45242303 |
ttgaaagttgaaaccactcaggactctgcaactgctatttcataaattttggttcaacctgtgttagttgtacggtagtgttgtttgggtttaatatatc |
45242204 |
T |
|
| Q |
329 |
aaatttaaatatggtatg--tataggatgaatatatggtgatttcgacacaccttgtttgtgtcacgtgacacggttaagtcatgcttgatcaattatct |
426 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242203 |
aaatttaaatatggtatgtatataggatgaatatatggtgatttcgacacaccttgtttgtgtcacgtgacacggttaagtcatgcttgatcaattatct |
45242104 |
T |
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| Q |
427 |
gttc |
430 |
Q |
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|||| |
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| T |
45242103 |
gttc |
45242100 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 11425447 - 11425493
Alignment:
| Q |
274 |
attttggttcaacctgtgttagttgtacggtagtgttgtttgggttt |
320 |
Q |
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| T |
11425447 |
attttggttcaacacgtgttagtcgtatggtagtgttgtttgggttt |
11425493 |
T |
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