View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2631_high_17 (Length: 244)

Name: NF2631_high_17
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2631_high_17
NF2631_high_17
[»] chr1 (13 HSPs)
chr1 (1-228)||(47713259-47713486)
chr1 (1-228)||(47745842-47746069)
chr1 (1-228)||(47718053-47718280)
chr1 (1-228)||(47760174-47760401)
chr1 (83-225)||(6512957-6513099)
chr1 (91-210)||(6517364-6517483)
chr1 (5-210)||(6521552-6521757)
chr1 (78-210)||(6507051-6507183)
chr1 (119-230)||(6500263-6500374)
chr1 (1-192)||(6523572-6523763)
chr1 (143-210)||(47777870-47777937)
chr1 (1-43)||(47778037-47778079)
chr1 (136-233)||(47772886-47772983)
[»] chr5 (4 HSPs)
chr5 (4-225)||(28856511-28856732)
chr5 (1-225)||(28861785-28862009)
chr5 (7-225)||(28831318-28831536)
chr5 (107-228)||(27371748-27371869)
[»] scaffold0341 (2 HSPs)
scaffold0341 (78-210)||(1076-1208)
scaffold0341 (78-210)||(8730-8862)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 47713259 - 47713486
Alignment:
Q  1 ccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713259 ccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctg 47713358  T
Q  101 cagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaaggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47713359 cagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaaggg 47713458  T
Q  201 tgttgaggttgttttgataggtgctatt 228  Q
    ||||||||||||||||||||||||||||    
T  47713459 tgttgaggttgttttgataggtgctatt 47713486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 47745842 - 47746069
Alignment:
Q  1 ccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctg 100  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||  || ||||||||||||||||||    
T  47745842 ccaactaattgcttctttttgggttggacaaagttttgtgagaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctg 47745941  T
Q  101 cagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaaggg 200  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47745942 cagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaaggg 47746041  T
Q  201 tgttgaggttgttttgataggtgctatt 228  Q
    ||||||||||||||||||||||||||||    
T  47746042 tgttgaggttgttttgataggtgctatt 47746069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 47718053 - 47718280
Alignment:
Q  1 ccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  47718053 ccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacaacttcggcaaacgtcaggtttaacatctcctctg 47718152  T
Q  101 cagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaaggg 200  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||| |||||||    
T  47718153 cagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaaggg 47718252  T
Q  201 tgttgaggttgttttgataggtgctatt 228  Q
    || |||||||||||||||||||||||||    
T  47718253 tgctgaggttgttttgataggtgctatt 47718280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 47760174 - 47760401
Alignment:
Q  1 ccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||     
T  47760174 ccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcgttgagacaactgcggcaaacgtcgggtttaacatctcctcta 47760273  T
Q  101 cagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaaggg 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||  | ||||||||| |||||||| |||| ||    
T  47760274 cagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgtagaaaccgtagttgatttctgcgttggaagttagattggacaaaacgg 47760373  T
Q  201 tgttgaggttgttttgataggtgctatt 228  Q
    ||||||||||||||||||||||||||||    
T  47760374 tgttgaggttgttttgataggtgctatt 47760401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 6512957 - 6513099
Alignment:
Q  83 ggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaag 182  Q
    ||||| ||||||||||| || |||||||| |||||||||||||||||||||   ||||||||| |||| ||||| ||||||||||| |   |||||||||    
T  6512957 ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaag 6513056  T
Q  183 tgagattggataaaagggtgttgaggttgttttgataggtgct 225  Q
    ||||| |||||| ||||||||| ||||| || |||||||||||    
T  6513057 tgagagtggatagaagggtgttaaggtttttgtgataggtgct 6513099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 6517364 - 6517483
Alignment:
Q  91 atctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattg 190  Q
    |||||||||||| |||||||| ||||||||||||||| |||||  |||||||||| | || ||||| |||||||||||||   |||||||||||||| ||    
T  6517364 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatg 6517463  T
Q  191 gataaaagggtgttgaggtt 210  Q
    |||||||||||||| |||||    
T  6517464 gataaaagggtgttaaggtt 6517483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 6521757 - 6521552
Alignment:
Q  5 ccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcaga 104  Q
    ||||||||||||||| ||||| ||||| ||| ||| ||||||||  ||||||  ||||| | | |  | ||| |||   |||| ||||||||||| || |    
T  6521757 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 6521658  T
Q  105 gtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgtt 204  Q
    ||||||| |||||||||||||| ||||| |  ||||||||| |||| ||||| ||||||||||| |   |||||||||||||| ||||||||||||||||    
T  6521657 gtccaatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgtt 6521558  T
Q  205 gaggtt 210  Q
     |||||    
T  6521557 aaggtt 6521552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 6507051 - 6507183
Alignment:
Q  78 catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgtt 177  Q
    |||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||  |||||||||| |||| ||||| |||||||| || |   ||||    
T  6507051 catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgtt 6507150  T
Q  178 ggaagtgagattggataaaagggtgttgaggtt 210  Q
    |||||||||| |||||| |||||| ||||||||    
T  6507151 ggaagtgagagtggatagaagggttttgaggtt 6507183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 6500263 - 6500374
Alignment:
Q  119 actttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgat 218  Q
    ||||||||| |||||| |||||  || ||||||||||| |||||||||||||  ||||||||||||||| | |||||||| ||||||||||| || | ||    
T  6500263 actttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgagagttgataaaagtgtgttgaggtttttgtcat 6500362  T
Q  219 aggtgctatttg 230  Q
    ||||||||||||    
T  6500363 aggtgctatttg 6500374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 6523763 - 6523572
Alignment:
Q  1 ccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctg 100  Q
    ||||||||||||||||||||||||||||||||| | |||||||      |||||| ||||||| | |||  | ||  | |  |  |||||||| ||||||    
T  6523763 ccaaccaattgcttctttttggtttggacaaagctgtgtgagattgttacttgaaccattgaggcaactaagacactcgtttgtcttaacatcgcctctg 6523664  T
Q  101 cagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattgga 192  Q
    || || ||||| |||||||||||||  |||||||  || |  |||||||||||||| |||||||||||||| ||||||||||||||| ||||    
T  6523663 caaagaccaattgcgtttactttgtttgtgttttcaccgtttgagaaattgtagaaaccgtagttgatttgcgtgttggaagtgagagtgga 6523572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 47777937 - 47777870
Alignment:
Q  143 gagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggtt 210  Q
    |||||||||||||| ||||| |||||||| ||||||||| ||||| |||||||||| |||||||||||    
T  47777937 gagaaattgtagaaaccgtaattgatttgtgtgttggaaatgagagtggataaaagtgtgttgaggtt 47777870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 47778079 - 47778037
Alignment:
Q  1 ccaaccaattgcttctttttggtttggacaaagttttgtgaga 43  Q
    ||||||||||||||| |||| |||||||||||||| |||||||    
T  47778079 ccaaccaattgcttcctttttgtttggacaaagttgtgtgaga 47778037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 47772983 - 47772886
Alignment:
Q  136 gccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctatttgatg 233  Q
    |||||| |||||||||||||| |||||||||||||  || |  ||||  ||| |||| ||||| || || |||||||| | |||||||||||| ||||    
T  47772983 gccatatgagaaattgtagaaaccgtagttgatttctgtatgagaagaaagactggacaaaagagttttaaggttgttgtcataggtgctattggatg 47772886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 28856511 - 28856732
Alignment:
Q  4 accaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcag 103  Q
    ||||||||||||||||| ||||||||||  || ||| ||||||||||||||||  || |||| |||||||||| |||  || |||||||||||||||||     
T  28856511 accaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcat 28856610  T
Q  104 agtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgt 203  Q
    | ||| ||||||| |||||||| | ||| || |||  | ||||| |||||||| |||||| ||||||  ||||||||||| ||| | |||||||| ||||    
T  28856611 aatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgt 28856710  T
Q  204 tgaggttgttttgataggtgct 225  Q
    ||||||| | |||||| |||||    
T  28856711 tgaggttttgttgatatgtgct 28856732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28861785 - 28862009
Alignment:
Q  1 ccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctg 100  Q
    |||||||||||||||||||||||| |||||   || ||| ||||||||||||||||  || |||| |||||||||| |||  || |||||||||||||||    
T  28861785 ccaaccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctg 28861884  T
Q  101 cagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaaggg 200  Q
    || | ||| ||||||| |||||||| | ||| || |||  | ||||| |||||||| |||||| ||||||  ||||||||||| ||| | |||||||| |    
T  28861885 cataatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtg 28861984  T
Q  201 tgttgaggttgttttgataggtgct 225  Q
    |||||||||| | |||||| |||||    
T  28861985 tgttgaggttttgttgatatgtgct 28862009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 28831318 - 28831536
Alignment:
Q  7 aattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagt 106  Q
    |||||||||||||||||||||||||  || ||| ||||||||||||||||  || |||  || ||||||| |||  || |||||||||||||| || | |    
T  28831318 aattgcttctttttggtttggacaattttgtgttagaagaactcttgaattgttaagataacggcggcaatcatttggattaacatctcctctacataat 28831417  T
Q  107 ccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttga 206  Q
    || ||||||| |||||||| | ||  || ||| || ||||| |||||||| |||||| ||||||  ||||||||||| ||| | |||||||| |||||||    
T  28831418 cctatggcgtatactttgttgttgcctttgccgtatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttga 28831517  T
Q  207 ggttgttttgataggtgct 225  Q
    |||| | |||||| |||||    
T  28831518 ggttttgttgatatgtgct 28831536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 27371748 - 27371869
Alignment:
Q  107 ccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttga 206  Q
    |||||||| |||| |||||| | || ||||||||| ||||||||||| || |||||||| ||||  |||| ||||| || | || ||| |||||| || |    
T  27371748 ccaatggcctttattttgtctgggtgttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaa 27371847  T
Q  207 ggttgttttgataggtgctatt 228  Q
    ||||||| |  |||||||||||    
T  27371848 ggttgttgtcgtaggtgctatt 27371869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 1076 - 1208
Alignment:
Q  78 catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgtt 177  Q
    |||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||  |||||||||| |||| ||||| |||||||| || |   ||||    
T  1076 catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgtt 1175  T
Q  178 ggaagtgagattggataaaagggtgttgaggtt 210  Q
    |||||||||| |||||| |||||| ||||||||    
T  1176 ggaagtgagagtggatagaagggttttgaggtt 1208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 8730 - 8862
Alignment:
Q  78 catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgtt 177  Q
    |||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||  |||||||||| |||| ||||| |||||||| || |   ||||    
T  8730 catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgtt 8829  T
Q  178 ggaagtgagattggataaaagggtgttgaggtt 210  Q
    |||||||||| |||||| |||||| ||||||||    
T  8830 ggaagtgagagtggatagaagggttttgaggtt 8862  T

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